RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GLUD2P49448 558 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 AARSP49588 968 aaKnown RBP eCLIP10.77□□□□□ -0.68
CD44-207ENST00000425428 SMAD3P84022 425 aaKnown RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 PLCB3Q01970 1234 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 ARID5AQ03989 594 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 STILQ15468 1287 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 TDRD12Q587J7 1177 aaKnown RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 PDE12Q6L8Q7 609 aaKnown RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 FBXO22Q8NEZ5 403 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 CXorf38Q8TB03 319 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 MICAL1Q8TDZ2 1067 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 SYN2Q92777 582 aaPredicted RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 PPP2R3CQ969Q6 453 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 HEXIM2Q96MH2 286 aaKnown RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.77□□□□□ -0.68
CD44-207ENST00000425428 DDX43Q9NXZ2 648 aaKnown RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 CACNG4Q9UBN1 327 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 LZTS1Q9Y250 596 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 KIAA1671Q9BY89 1806 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 LINC01553A4QN01 128 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 OR6C75A6NL08 312 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 F8VZ95 297 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 SOD2P04179 222 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 GYPCP04921 128 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 CYP11A1P05108 521 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 PAEPP09466 180 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 CD19P15391 556 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 PBX3P40426 434 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 KLHL30Q0D2K2 578 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 SMARCB1Q12824 385 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 PTPN21Q16825 1174 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 SOWAHAQ2M3V2 549 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 CTXN3Q4LDR2 81 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 WSCD1Q658N2 575 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 ELMSAN1Q6PJG2 1045 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 TMC7Q7Z402 723 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 PDCL2Q8N4E4 241 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 RBBP8NLQ8NC74 664 aaPredicted RBP10.77□□□□□ -0.69
CD44-207ENST00000425428 SHC3Q92529 594 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 TRIM44Q96DX7 344 aaPredicted RBP10.77□□□□□ -0.69
CD44-207ENST00000425428 TMEM176AQ96HP8 235 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 NAA15Q9BXJ9 866 aaKnown RBP10.77□□□□□ -0.69
CD44-207ENST00000425428 SMYD3Q9H7B4 428 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 APOBEC3GQ9HC16 384 aaKnown RBP10.77□□□□□ -0.69
CD44-207ENST00000425428 SIX2Q9NPC8 291 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 LUC7LQ9NQ29 371 aaKnown RBP10.77□□□□□ -0.69
CD44-207ENST00000425428 ENTPD7Q9NQZ7 604 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 PCDH10Q9P2E7 1040 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 HESX1Q9UBX0 185 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 CDH9Q9ULB4 789 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 L1RE1Q9UN81 338 aa10.77□□□□□ -0.69
CD44-207ENST00000425428 LRRC53A6NM62 1247 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 GRXCR1A8MXD5 290 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 I3L4J1 428 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 SPTLC1O15269 473 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 MFAP3LO75121 409 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 GFPT2O94808 682 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 NOL4O94818 638 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 PDGFRBP09619 1106 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 GNA15P30679 374 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 RAP1GAPP47736 663 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 NDST1P52848 882 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 CDH8P55286 799 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 SNX16P57768 344 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 INCA1Q0VD86 236 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 PTPROQ16827 1216 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 ZNF394Q53GI3 561 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 SGO2Q562F6 1265 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 PPP1R2P3Q6NXS1 205 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 GJB7Q6PEY0 223 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 C4orf50Q6ZRC1 276 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 ZNF677Q86XU0 584 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 VPS52Q8N1B4 723 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 KLHL23Q8NBE8 558 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 MSANTD4Q8NCY6 345 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 C3orf58Q8NDZ4 430 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 CCDC112Q8NEF3 446 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 RIN2Q8WYP3 895 aaPredicted RBP10.76□□□□□ -0.69
CD44-207ENST00000425428 TIFAQ96CG3 184 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 PANX2Q96RD6 677 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 ACBD6Q9BR61 282 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 MED10Q9BTT4 135 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 HERC2P3Q9BVR0 1158 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 EMILIN2Q9BXX0 1053 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 PBX4Q9BYU1 374 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 NGRNQ9NPE2 291 aaKnown RBP10.76□□□□□ -0.69
CD44-207ENST00000425428 SEPT11Q9NVA2 429 aaKnown RBP10.76□□□□□ -0.69
CD44-207ENST00000425428 MTUS1Q9ULD2 1270 aa10.76□□□□□ -0.69
CD44-207ENST00000425428 FOXN3O00409 490 aaPredicted RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 THAP12O43422 761 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 CILPO75339 1184 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 SERPING1P05155 500 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 VDRP11473 427 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 CPB1P15086 417 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 FGFR3P22607 806 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 TKTP29401 623 aaKnown RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 ADKP55263 362 aaKnown RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 GPM6BQ13491 265 aa10.75□□□□□ -0.69
CD44-207ENST00000425428 NFE2Q16621 373 aaPredicted RBP10.75□□□□□ -0.69
CD44-207ENST00000425428 VARS2Q5ST30 1063 aaKnown RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms