RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 RSPH3Q86UC2 560 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 AP1M1Q9BXS5 423 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 IPPQ9Y573 584 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 MED7O43513 233 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 CTNNA1P35221 906 aaKnown RBP28.17■■■□□ 2.1
LDB1-202ENST00000425280 SESTD1Q86VW0 696 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 SMG8Q8ND04 991 aaKnown RBP28.17■■■□□ 2.1
LDB1-202ENST00000425280 RUBCNQ92622 972 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 TMEM176AQ96HP8 235 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 MRPL47Q9HD33 250 aaKnown RBP28.17■■■□□ 2.1
LDB1-202ENST00000425280 KLK14Q9P0G3 267 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 PARP2Q9UGN5 583 aa28.17■■■□□ 2.1
LDB1-202ENST00000425280 SCN1AP35498 2009 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 GRIN2DO15399 1336 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 FGGP02679 453 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 HMGCRP04035 888 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 HOXD10P28358 340 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 PTPN11Q06124 597 aaPredicted RBP28.16■■■□□ 2.1
LDB1-202ENST00000425280 INCA1Q0VD86 236 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 XKR4Q5GH76 650 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 MAP3K21Q5TCX8 1036 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 PCDHA3Q9Y5H8 950 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 SCINQ9Y6U3 715 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 THSD7BQ9C0I4 1608 aa28.16■■■□□ 2.1
LDB1-202ENST00000425280 KRIT1O00522 736 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 HINFPQ9BQA5 517 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 SENP6Q9GZR1 1112 aaPredicted RBP28.15■■■□□ 2.1
LDB1-202ENST00000425280 LHX5Q9H2C1 402 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 FAM124BQ9H5Z6 455 aaPredicted RBP28.15■■■□□ 2.1
LDB1-202ENST00000425280 STIM2Q9P246 746 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 BARX2Q9UMQ3 279 aaPredicted RBP28.15■■■□□ 2.1
LDB1-202ENST00000425280 UBQLN1Q9UMX0 589 aaKnown RBP28.15■■■□□ 2.1
LDB1-202ENST00000425280 CEP83Q9Y592 693 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 SMIM28A0A1B0GU29 152 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 CCDC66A2RUB6 948 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 MYO1FO00160 1098 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 CHRNA1P02708 482 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 CALB1P05937 261 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 TWF2Q6IBS0 349 aaKnown RBP28.15■■■□□ 2.1
LDB1-202ENST00000425280 KLHL7Q8IXQ5 586 aa28.15■■■□□ 2.1
LDB1-202ENST00000425280 CTSHP09668 335 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 ITGA4P13612 1032 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 KCNE1P15382 129 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 APLP1P51693 650 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 CCNI2Q6ZMN8 369 aaPredicted RBP28.14■■■□□ 2.1
LDB1-202ENST00000425280 RPAINQ86UA6 219 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 LRRC52Q8N7C0 313 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 PARVAQ9NVD7 372 aa28.14■■■□□ 2.1
LDB1-202ENST00000425280 TLR3O15455 904 aaKnown RBP28.14■■■□□ 2.09
LDB1-202ENST00000425280 ATP8B1O43520 1251 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 NDST1P52848 882 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 C9orf57Q5W0N0 161 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 AADACL2Q6P093 401 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 ARRDC4Q8NCT1 418 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 FUT8Q9BYC5 575 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 ST3GAL5Q9UNP4 418 aa28.14■■■□□ 2.09
LDB1-202ENST00000425280 CCDC188H7C350 402 aa28.13■■■□□ 2.09
LDB1-202ENST00000425280 RPS6KA5O75582 802 aa28.13■■■□□ 2.09
LDB1-202ENST00000425280 MGAT3Q09327 533 aa28.13■■■□□ 2.09
LDB1-202ENST00000425280 TTC39CQ8N584 583 aa28.13■■■□□ 2.09
LDB1-202ENST00000425280 DDX20Q9UHI6 824 aaKnown RBP28.13■■■□□ 2.09
LDB1-202ENST00000425280 TCRBV5S1A1TA0A578 114 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 SASH3O75995 380 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 PROSCO94903 275 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 GJB6O95452 261 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 SLC1A1P43005 524 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 ERICH1Q86X53 443 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 PCSK9Q8NBP7 692 aaKnown RBP28.12■■■□□ 2.09
LDB1-202ENST00000425280 FEZF2Q8TBJ5 459 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 TSPAN18Q96SJ8 248 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 CYTH4Q9UIA0 394 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 L1RE1Q9UN81 338 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 SNX9Q9Y5X1 595 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 MYBL2P10244 700 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 HEXIM2Q96MH2 286 aaKnown RBP28.12■■■□□ 2.09
LDB1-202ENST00000425280 NAP1L3Q99457 506 aaPredicted RBP28.12■■■□□ 2.09
LDB1-202ENST00000425280 FAM53CQ9NYF3 392 aa28.12■■■□□ 2.09
LDB1-202ENST00000425280 RAD51CO43502 376 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 CD4P01730 458 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 PYGMP11217 842 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 VDRP11473 427 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 PTGISQ16647 500 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 WDR3Q9UNX4 943 aaKnown RBP eCLIP28.11■■■□□ 2.092e-11■□□□□ 9.7
LDB1-202ENST00000425280 NR2E1Q9Y466 385 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 PIRO00625 290 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 RPLP2P05387 115 aaKnown RBP28.11■■■□□ 2.09
LDB1-202ENST00000425280 GLI1P08151 1106 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 CLUL1Q15846 466 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 RAET1EQ8TD07 263 aa28.11■■■□□ 2.09
LDB1-202ENST00000425280 MRPL45Q9BRJ2 306 aaKnown RBP28.11■■■□□ 2.09
LDB1-202ENST00000425280 DDX47Q9H0S4 455 aaKnown RBP28.11■■■□□ 2.09
LDB1-202ENST00000425280 SPDYE4A6NLX3 237 aa28.1■■■□□ 2.09
LDB1-202ENST00000425280 MICAL2O94851 1124 aa28.1■■■□□ 2.09
LDB1-202ENST00000425280 RWDD2BP57060 319 aa28.1■■■□□ 2.09
LDB1-202ENST00000425280 NFX1Q12986 1120 aaKnown RBP28.1■■■□□ 2.09
LDB1-202ENST00000425280 PTPN20Q4JDL3 420 aa28.1■■■□□ 2.09
LDB1-202ENST00000425280 GSPT2Q8IYD1 628 aaKnown RBP28.1■■■□□ 2.09
LDB1-202ENST00000425280 NT5C1AQ9BXI3 368 aa28.1■■■□□ 2.09
LDB1-202ENST00000425280 O00370 1275 aa28.09■■■□□ 2.09
LDB1-202ENST00000425280 XPOTO43592 962 aaKnown RBP28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms