RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 PCDHB4Q9Y5E5 795 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 A8MXQ7 604 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 C5orf67F2Z3F1 127 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 M0QZQ0 153 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 SPTLC1O15269 473 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 LRRN2O75325 713 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 ADCY5O95622 1261 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 CXCL14O95715 111 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 WEE2P0C1S8 567 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 TYMPP19971 482 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 GNL1P36915 607 aaPredicted RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 KLK7P49862 253 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 ZNF75DP51815 510 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 MCCD1P59942 119 aaPredicted RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 POLR2FP61218 127 aaKnown RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 GCNT1Q02742 428 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 PTPN21Q16825 1174 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 VARS2Q5ST30 1063 aaKnown RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 WSCD1Q658N2 575 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 SPECC1LQ69YQ0 1117 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 APTXQ7Z2E3 356 aaKnown RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 GLYCTKQ8IVS8 523 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 BCL7CQ8WUZ0 217 aaPredicted RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 CPLX3Q8WVH0 158 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 FAXDC2Q96IV6 333 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 TNIP3Q96KP6 325 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 B3GALT6Q96L58 329 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 TCF25Q9BQ70 676 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 EMILIN2Q9BXX0 1053 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 GPR62Q9BZJ7 368 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 LMAN2LQ9H0V9 348 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 XYLT2Q9H1B5 865 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 PDCL3Q9H2J4 239 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 ZNF576Q9H609 170 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 PLCB1Q9NQ66 1216 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 DDX43Q9NXZ2 648 aaKnown RBP9.05□□□□□ -0.96
TRIM48-201ENST00000417545 CEP72Q9P209 647 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 L1RE1Q9UN81 338 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 LZTS1Q9Y250 596 aa9.05□□□□□ -0.96
TRIM48-201ENST00000417545 CEP290O15078 2479 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ATP8B3O60423 1300 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 TMEM265A0A087WTH1 108 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 OR6C75A6NL08 312 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 H3BNC9 293 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ARHGEF15O94989 841 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 PDGFRBP09619 1106 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 CCDC172P0C7W6 258 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 UCHL3P15374 230 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 CD19P15391 556 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 WARSP23381 471 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ASPAP45381 313 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 AARSP49588 968 aaKnown RBP eCLIP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 CDH8P55286 799 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 KCNMA1Q12791 1236 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 SOWAHAQ2M3V2 549 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ZNF394Q53GI3 561 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 KLHDC7AQ5VTJ3 777 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 IQCEQ6IPM2 695 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 PDE12Q6L8Q7 609 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 PHLDB3Q6NSJ2 640 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 GJB7Q6PEY0 223 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ELMSAN1Q6PJG2 1045 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 TMEM270Q6UE05 265 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 PRSS55Q6UWB4 352 aaPredicted RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 DCP1BQ8IZD4 617 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 PDCL2Q8N4E4 241 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 CXorf38Q8TB03 319 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 SPATA18Q8TC71 538 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 MRFAP1L1Q96HT8 127 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 GAS2L1Q99501 681 aaPredicted RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 MRPL45Q9BRJ2 306 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 MED10Q9BTT4 135 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 NT5C1AQ9BXI3 368 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 OXCT2Q9BYC2 517 aaPredicted RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 BCO2Q9BYV7 579 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 APOBEC3GQ9HC16 384 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 NGRNQ9NPE2 291 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 CISHQ9NSE2 258 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ZNHIT6Q9NWK9 470 aaKnown RBP9.04□□□□□ -0.96
TRIM48-201ENST00000417545 SIK3Q9Y2K2 1263 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 FHOD1Q9Y613 1164 aa9.04□□□□□ -0.96
TRIM48-201ENST00000417545 ITIH6Q6UXX5 1313 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 VWA8A3KMH1 1905 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 GRM6O15303 877 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 TACC1O75410 805 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 CYP11A1P05108 521 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 ADH1AP07327 375 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 FAM163BP0C2L3 166 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 CTSAP10619 480 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 FGFR3P22607 806 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 ACAT1P24752 427 aaKnown RBP9.03□□□□□ -0.96
TRIM48-201ENST00000417545 KLRC2P26717 231 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 ELF1P32519 619 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 STAT1P42224 750 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 NDST1P52848 882 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 CYP27A1Q02318 531 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 APBA1Q02410 837 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 DSG1Q02413 1049 aa9.03□□□□□ -0.96
TRIM48-201ENST00000417545 DRAP1Q14919 205 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms