RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CKBP12277 381 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 HSD17B3P37058 310 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PEX5P50542 639 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 CYP1B1Q16678 543 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 CLEC16AQ2KHT3 1053 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TCTN1Q2MV58 587 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TRIM71Q2Q1W2 868 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 WDR44Q5JSH3 913 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PPP2R2DQ66LE6 453 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 DUPD1Q68J44 220 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TRIM72Q6ZMU5 477 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 CYFIP1Q7L576 1253 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TAS1R3Q7RTX0 852 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 SLC47A2Q86VL8 602 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PSPC1Q8WXF1 523 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 PPM1EQ8WY54 764 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 DDX1Q92499 740 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 ERP44Q9BS26 406 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 NUP85Q9BW27 656 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TSPYL1Q9H0U9 437 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 DHX33Q9H6R0 707 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 PARP2Q9UGN5 583 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TRPC6Q9Y210 931 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PCDHA3Q9Y5H8 950 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 VCANP13611 3396 aa15.77■□□□□ 0.12
USP4-203ENST00000415188 IGKV6D-21A0A0A0MT36 114 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 PODXLO00592 558 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 DAPK3O43293 454 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 NBNO60934 754 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 PPFIA2O75334 1257 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 LGALS2P05162 132 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 COMTP21964 271 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 ARL2P36404 184 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 EIF3BP55884 814 aaKnown RBP15.77■□□□□ 0.11
USP4-203ENST00000415188 PTK7Q13308 1070 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 MESDQ14696 234 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 TRADDQ15628 312 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 MTERF2Q49AM1 385 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 AGBL2Q5U5Z8 902 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 TRAF7Q6Q0C0 670 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 METTL7BQ6UX53 244 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 TMC3Q7Z5M5 1100 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 MAIP1Q8WWC4 291 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 FNBP1Q96RU3 617 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 FAM213AQ9BRX8 229 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 FAM107BQ9H098 131 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 TMEM134Q9H6X4 195 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 PRDM6Q9NQX0 595 aa15.77■□□□□ 0.11
USP4-203ENST00000415188 NOP56O00567 594 aaKnown RBP15.76■□□□□ 0.11
USP4-203ENST00000415188 CA3P07451 260 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 MYZAPP0CAP1 466 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 DLATP10515 647 aaKnown RBP15.76■□□□□ 0.11
USP4-203ENST00000415188 IGFBP4P22692 258 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 GNGT1P63211 74 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 SP4Q02446 784 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 NEDD9Q14511 834 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 ZACNQ401N2 412 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 CEP85LQ5SZL2 805 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 ZNF618Q5T7W0 954 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 FAM160B1Q5W0V3 765 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 TMCO2Q7Z6W1 182 aaPredicted RBP15.76■□□□□ 0.11
USP4-203ENST00000415188 TRIM50Q86XT4 487 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 C12orf50Q8NA57 414 aaPredicted RBP15.76■□□□□ 0.11
USP4-203ENST00000415188 DEPTORQ8TB45 409 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 ZBTB9Q96C00 473 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 SLC9A7Q96T83 725 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 FMO2Q99518 471 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 PLEKHA4Q9H4M7 779 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 TOPORSQ9NS56 1045 aaPredicted RBP15.76■□□□□ 0.11
USP4-203ENST00000415188 NRBP2Q9NSY0 501 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 AGO2Q9UKV8 859 aaKnown RBP15.76■□□□□ 0.11
USP4-203ENST00000415188 PCDHB2Q9Y5E7 798 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 NFS1Q9Y697 457 aa15.76■□□□□ 0.11
USP4-203ENST00000415188 H3BRB1 525 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 SPOPO43791 374 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 ARHGEF15O94989 841 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 KRT14P02533 472 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 SMIM10L2AP0DMW4 78 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 SMIM10L2BP0DMW5 78 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 NR1D1P20393 614 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 SLC1A1P43005 524 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 FNTAP49354 379 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 AP3M2P53677 418 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 RWDD2BP57060 319 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 MBTPS1Q14703 1052 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 UAP1Q16222 522 aaPredicted RBP15.75■□□□□ 0.11
USP4-203ENST00000415188 TRMT1LQ7Z2T5 733 aaKnown RBP15.75■□□□□ 0.11
USP4-203ENST00000415188 CROCCP2Q86T23 111 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 DDX42Q86XP3 938 aaKnown RBP eCLIP15.75■□□□□ 0.11
USP4-203ENST00000415188 JAMLQ86YT9 394 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 HERC6Q8IVU3 1022 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 ATP8B4Q8TF62 1192 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 SLC7A3Q8WY07 619 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 TATDN2Q93075 761 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 FAM167AQ96KS9 214 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 POP1Q99575 1024 aaKnown RBP15.75■□□□□ 0.11
USP4-203ENST00000415188 CGRRF1Q99675 332 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 GPR20Q99678 358 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 TXLNGYQ9BZA5 131 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 NEUROG2Q9H2A3 272 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms