RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TRIP11Q15643 1979 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 PTPRSQ13332 1948 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 PODXLO00592 558 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 NRP1O14786 923 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 PPEF2O14830 753 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 PMM2O15305 246 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 N4BP1O75113 896 aaKnown RBP14.36□□□□□ -0.11
LIMS1-204ENST00000409441 B3GAT3O94766 335 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 VNN1O95497 513 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 IGFBP6P24592 240 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-204ENST00000409441 SLC11A1P49279 550 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 CETN1Q12798 172 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 NCOA4Q13772 614 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 BRD3Q15059 726 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 TDRD12Q587J7 1177 aaKnown RBP14.36□□□□□ -0.11
LIMS1-204ENST00000409441 DPY19L2P1Q6NXN4 242 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 KCNT2Q6UVM3 1135 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 RNF10Q8N5U6 811 aaKnown RBP14.36□□□□□ -0.11
LIMS1-204ENST00000409441 MSANTD4Q8NCY6 345 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 TAS1R2Q8TE23 839 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 CRACR2AQ9BSW2 395 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 COLEC11Q9BWP8 271 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 PBX4Q9BYU1 374 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 AAASQ9NRG9 546 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 MSRAQ9UJ68 235 aa14.36□□□□□ -0.11
LIMS1-204ENST00000409441 YBX2Q9Y2T7 364 aaKnown RBP14.36□□□□□ -0.11
LIMS1-204ENST00000409441 PRG3Q9Y2Y8 225 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-204ENST00000409441 COL4A6Q14031 1691 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 LINC01553A4QN01 128 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 NT5C1B-RDH14C9J2C7 533 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 P4HA2O15460 535 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 HLA-DRAP01903 254 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 CA3P07451 260 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 LAG3P18627 525 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 PBX3P40426 434 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 MYL6P60660 151 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 MYL7Q01449 175 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 RAPGEF1Q13905 1077 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 SGSM1Q2NKQ1 1148 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 C10orf76Q5T2E6 689 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 KLHDC7AQ5VTJ3 777 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 PRPF38BQ5VTL8 546 aaKnown RBP14.35□□□□□ -0.11
LIMS1-204ENST00000409441 FBXL13Q8NEE6 735 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 SEMA4DQ92854 862 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 CLP1Q92989 425 aaKnown RBP14.35□□□□□ -0.11
LIMS1-204ENST00000409441 ZNF558Q96NG5 402 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 ALS2CR12Q96Q35 445 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 RAB20Q9NX57 234 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 PUF60Q9UHX1 559 aaKnown RBP14.35□□□□□ -0.11
LIMS1-204ENST00000409441 COQ4Q9Y3A0 265 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 JRKLQ9Y4A0 524 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 ANK1P16157 1881 aa14.35□□□□□ -0.11
LIMS1-204ENST00000409441 FNDC1Q4ZHG4 1894 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-204ENST00000409441 MYH10P35580 1976 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 RANBP2P49792 3224 aaKnown RBP14.34□□□□□ -0.11
LIMS1-204ENST00000409441 A0A1W2PPC1 479 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 CCDC151A5D8V7 595 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 F8W810 466 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 LRRN2O75325 713 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 TADA2AO75478 443 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 ZRANB2O95218 330 aaKnown RBP eCLIP14.34□□□□□ -0.11
LIMS1-204ENST00000409441 ATP1A1P05023 1023 aaKnown RBP14.34□□□□□ -0.11
LIMS1-204ENST00000409441 LINC00271P0C7V0 271 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 PRLRP16471 622 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 PON1P27169 355 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 LILRA4P59901 499 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 RAB30Q15771 203 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 SLC18A3Q16572 532 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 CD300LGQ6UXG3 332 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 COLGALT1Q8NBJ5 622 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 C3orf58Q8NDZ4 430 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 HPDLQ96IR7 371 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 PARD6BQ9BYG5 372 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 ZNF446Q9NWS9 450 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 TFR2Q9UP52 801 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 PCDHB12Q9Y5F1 795 aa14.34□□□□□ -0.11
LIMS1-204ENST00000409441 ARHGEF15O94989 841 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 KIF4AO95239 1232 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 ITGB1P05556 798 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 UCHL3P15374 230 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 ATICP31939 592 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 BMPR1AP36894 532 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 PNPLA4P41247 253 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 PRKCIP41743 596 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 PIK3CAP42336 1068 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 SMAD3P84022 425 aaKnown RBP14.33□□□□□ -0.11
LIMS1-204ENST00000409441 KLHL30Q0D2K2 578 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 MYO1EQ12965 1108 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 FMNL3Q8IVF7 1028 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 LRRC52Q8N7C0 313 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 ELMO3Q96BJ8 720 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 SPAG5Q96R06 1193 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 PI4K2AQ9BTU6 479 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 XYLT2Q9H1B5 865 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 NKX2-4Q9H2Z4 354 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.33□□□□□ -0.11
LIMS1-204ENST00000409441 SPG21Q9NZD8 308 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 RAB21Q9UL25 225 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 NUB1Q9Y5A7 615 aa14.33□□□□□ -0.11
LIMS1-204ENST00000409441 MACROD2A1Z1Q3 448 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms