RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TTC30AQ86WT1 665 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 ZDHHC14Q8IZN3 488 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 BBOF1Q8ND07 529 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 RNF25Q96BH1 459 aaPredicted RBP10.21□□□□□ -0.77
COL6A3-204ENST00000392003 PARVAQ9NVD7 372 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 SPDYE5A6NIY4 337 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 TGFB3P10600 412 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 NOMO3P69849 1222 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 SNAPC2Q13487 334 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 IER5Q5VY09 327 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 MON1BQ7L1V2 547 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 GSTA5Q7RTV2 222 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 TLCD1Q96CP7 247 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 EPAS1Q99814 870 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 HEMGNQ9BXL5 484 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 ANAPC5Q9UJX4 755 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 AGTPBP1Q9UPW5 1226 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 RIPK2O43353 540 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 TRAPPC3O43617 180 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF24P17028 368 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 ATP5DP30049 168 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 C1QBPQ07021 282 aaKnown RBP10.21□□□□□ -0.78
COL6A3-204ENST00000392003 SIX1Q15475 284 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-204ENST00000392003 PREPLQ4J6C6 727 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-204ENST00000392003 CRELD2Q6UXH1 353 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-204ENST00000392003 CCDC121Q6ZUS5 278 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 ZC3H15Q8WU90 426 aaKnown RBP10.21□□□□□ -0.78
COL6A3-204ENST00000392003 RAPGEF5Q92565 580 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 SLCO2A1Q92959 643 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 CABS1Q96KC9 395 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 TRIM7Q9C029 511 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 MMADHCQ9H3L0 296 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-204ENST00000392003 IP6K2Q9UHH9 426 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 PNMA3Q9UL41 463 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 PPME1Q9Y570 386 aa10.21□□□□□ -0.78
COL6A3-204ENST00000392003 ARID2Q68CP9 1835 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 A0A0G2JLL6 359 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 GSTTP1A0A1W2PQM5 241 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TOM1L1O75674 476 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CALB1P05937 261 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 SRGAP2CP0DJJ0 459 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ACO1P21399 889 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 SSTR3P32745 418 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 RDXP35241 583 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TCF7P36402 384 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 SLCO1A2P46721 670 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CCNA1P78396 465 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 FSTL1Q12841 308 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PTP4A2Q12974 167 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PPIL2Q13356 520 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CAPSQ13938 189 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TRIP13Q15645 432 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 MAPK6Q16659 721 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 SEZ6Q53EL9 994 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 GKAP1Q5VSY0 366 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CDCA2Q69YH5 1023 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DCUN1D2Q6PH85 259 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CEP128Q6ZU80 1094 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PRRT2Q7Z6L0 340 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PHF13Q86YI8 300 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 BRSK2Q8IWQ3 736 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CACNA2D3Q8IZS8 1091 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 OR5B17Q8NGF7 314 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 FEZF2Q8TBJ5 459 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PRPF31Q8WWY3 499 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ATG4AQ8WYN0 398 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ROPN1BQ9BZX4 212 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DCLK3Q9C098 648 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ROPN1Q9HAT0 212 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 APOBEC3GQ9HC16 384 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 GGA2Q9UJY4 613 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 NUB1Q9Y5A7 615 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 GAS2O43903 313 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 FARP2O94887 1054 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TMEM191BP0C7N4 346 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 RALAP11233 206 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 VPS41P49754 854 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 YWHAEP62258 255 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 LMNB2Q03252 620 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 IFT88Q13099 833 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 MXD4Q14582 209 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 LY6KQ17RY6 165 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DUOXA2Q1HG44 320 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ZBTB41Q5SVQ8 909 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 MAP1SQ66K74 1059 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 METTL7BQ6UX53 244 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 C14orf80Q86SX3 495 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 WDR49Q8IV35 697 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CCDC89Q8N998 374 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TMEM35BQ8NCS4 154 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 KCNN1Q92952 543 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 XPO6Q96QU8 1125 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CCDC77Q9BR77 488 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 OSBPL8Q9BZF1 889 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 C2orf40Q9H1Z8 148 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CHST7Q9NS84 486 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 INTS9Q9NV88 658 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ATXN2Q99700 1313 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DOCK5Q9H7D0 1870 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PTPRJQ12913 1337 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms