RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MBTD1Q05BQ5 628 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 GRM1Q13255 1194 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 MAPK6Q16659 721 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 MICALL1Q8N3F8 863 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 EXD1Q8NHP7 514 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 CXorf38Q8TB03 319 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 TWNKQ96RR1 684 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 FAM129AQ9BZQ8 928 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 NIF3L1Q9GZT8 377 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 MRPL47Q9HD33 250 aaKnown RBP14.18□□□□□ -0.14
CCDC3-202ENST00000378839 DNPEPQ9ULA0 475 aa14.18□□□□□ -0.14
CCDC3-202ENST00000378839 C5orf60A6NFR6 353 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 GJA5P36382 358 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 ADCY8P40145 1251 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 SLC20A2Q08357 652 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 NFX1Q12986 1120 aaKnown RBP14.17□□□□□ -0.14
CCDC3-202ENST00000378839 IFT88Q13099 833 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 CALCOCO2Q13137 446 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 CCNG2Q16589 344 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 DUOXA2Q1HG44 320 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 PLPPR4Q7Z2D5 763 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 SELENOSQ9BQE4 189 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 IFT122Q9HBG6 1241 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC3-202ENST00000378839 A0A087WUV0 522 aaPredicted RBP14.17□□□□□ -0.14
CCDC3-202ENST00000378839 RASGRF2O14827 1237 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 ATF7IP2Q5U623 682 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 ICE2Q659A1 982 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 EFCAB12Q6NXP0 572 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 MPZL3Q6UWV2 235 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 B4GALNT4Q76KP1 1039 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.17□□□□□ -0.14
CCDC3-202ENST00000378839 ADARB2Q9NS39 739 aaKnown RBP14.17□□□□□ -0.14
CCDC3-202ENST00000378839 NINJ2Q9NZG7 142 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 AGTPBP1Q9UPW5 1226 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 CENPFP49454 3210 aa14.17□□□□□ -0.14
CCDC3-202ENST00000378839 NFICP08651 508 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MAN1A1P33908 653 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SGSM1Q2NKQ1 1148 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 PTPN20Q4JDL3 420 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 FAM182AQ5T1J6 154 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 C6orf118Q5T5N4 469 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SULF1Q8IWU6 871 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 DCPSQ96C86 337 aaKnown RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SEC16BQ96JE7 1060 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 PLVAPQ9BX97 442 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 CDT1Q9H211 546 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 C10orf88Q9H8K7 445 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 NXF1Q9UBU9 619 aaKnown RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SCINQ9Y6U3 715 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 C3orf70A6NLC5 250 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 INO80B-WBP1J3KQ70 363 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 NOP56O00567 594 aaKnown RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 ACKR2O00590 384 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 LIASO43766 372 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MPP2Q14168 576 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MXD4Q14582 209 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 TRMT10CQ7L0Y3 403 aaKnown RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 JOSD2Q8TAC2 188 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SYT17Q9BSW7 474 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 INO80BQ9C086 356 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 CXCL16Q9H2A7 254 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SAE1Q9UBE0 346 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 IP6K2Q9UHH9 426 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 ANAPC5Q9UJX4 755 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 SPDYE5A6NIY4 337 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 TTC4O95801 387 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 AGTP01019 485 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MYCNP04198 464 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 ATF2P15336 505 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 IL1R2P27930 398 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 CDH5P33151 784 aaPredicted RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 ZNF699Q32M78 642 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MFSD5Q6N075 450 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MAMDC4Q6UXC1 1216 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 ERO1BQ86YB8 467 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 CENPTQ96BT3 561 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 HAUS1Q96CS2 278 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 FAM167AQ96KS9 214 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 MMP19Q99542 508 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 PRMT1Q99873 361 aaKnown RBP14.16□□□□□ -0.14
CCDC3-202ENST00000378839 OSBPL7Q9BZF2 842 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 EFCC1Q9HA90 598 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 KCNH4Q9UQ05 1017 aa14.16□□□□□ -0.14
CCDC3-202ENST00000378839 EVPLQ92817 2033 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 C22orf31O95567 290 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 CPP00450 1065 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 TXNP10599 105 aaKnown RBP14.15□□□□□ -0.14
CCDC3-202ENST00000378839 RFC1P35251 1148 aaPredicted RBP14.15□□□□□ -0.14
CCDC3-202ENST00000378839 IGBP1P78318 339 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 C1orf127Q8N9H9 656 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 CDCA5Q96FF9 252 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 CYP2C8P10632 490 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 AMHR2Q16671 573 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 WDR72Q3MJ13 1102 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 HIBCHQ6NVY1 386 aaPredicted RBP14.15□□□□□ -0.14
CCDC3-202ENST00000378839 VSTM1Q6UX27 236 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 TCP11Q8WWU5 503 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 OPTNQ96CV9 577 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 C9orf72Q96LT7 481 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms