RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SPATA20Q8TB22 786 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 DDX1Q92499 740 aaKnown RBP3.93□□□□□ -1.78
MCF2-202ENST00000370573 CDHR1Q96JP9 859 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 PCYT2Q99447 389 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 TUFT1Q9NNX1 390 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 VTA1Q9NP79 307 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 SLC5A4Q9NY91 659 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 SLC9A2Q9UBY0 812 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 SUSD2Q9UGT4 822 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 ZNF236Q9UL36 1845 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 MGAMO43451 1857 aa3.93□□□□□ -1.78
MCF2-202ENST00000370573 NPHP3-ACAD11A0A0J9YXS1 232 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 TMEM150BA6NC51 233 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 GABRDO14764 452 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 ADCY6O43306 1168 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 TBX1O43435 398 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 FARP2O94887 1054 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 GGPS1O95749 300 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 MYL1P05976 194 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 RNASE1P07998 156 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 PLA2G4BP0C869 781 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 ZNF865P0CJ78 1059 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 TGFB3P10600 412 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 CYP2C19P33261 490 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 RGS2P41220 211 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 ADCYAP1R1P41586 468 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 ID4P47928 161 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SLC12A3P55017 1021 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PRKCZQ05513 592 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 IKZF1Q13422 519 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PIN1Q13526 163 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 ACVR2BQ13705 512 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 STAT4Q14765 748 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 CELF3Q5SZQ8 465 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 NT5DC1Q5TFE4 455 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PPP4R4Q6NUP7 873 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SWSAP1Q6NVH7 229 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 KCNV1Q6PIU1 500 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 NLRC3Q7RTR2 1065 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 FGD2Q7Z6J4 655 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 MFSD2AQ8NA29 543 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SLC7A14Q8TBB6 771 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 CD99L2Q8TCZ2 262 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PIGOQ8TEQ8 1089 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 LARP4BQ92615 738 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 MISP3Q96FF7 219 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 CDK5RAP3Q96JB5 506 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 HSPA12BQ96MM6 686 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 C7orf25Q9BPX7 421 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PYM1Q9BRP8 204 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 LXNQ9BS40 222 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 NT5C3AQ9H0P0 336 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 CUEDC2Q9H467 287 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 TRIM39Q9HCM9 518 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 MBNL3Q9NUK0 354 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 GMIPQ9P107 970 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 MAN1B1Q9UKM7 699 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PCDHA10Q9Y5I2 948 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 WDR81Q562E7 1941 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 TRBV23-1A0A0A0MS06 115 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 IGKV6D-21A0A0A0MT36 114 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 FSD2A1L4K1 749 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 H3BS24 57 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 GPR39O43194 453 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SH3BP5O60239 455 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 LYPLA2O95372 231 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SUPT20HL2P0C7V6 817 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 HSPA6P17066 643 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 MUTP22033 750 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 FUT4P22083 530 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SFNP31947 248 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 QARSP47897 775 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 FLT3LGP49771 235 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 JAK3P52333 1124 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 C1QTNF8P60827 252 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 PPP2R2AP63151 447 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 ARHGAP1Q07960 439 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 MORC3Q14149 939 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 NEDD9Q14511 834 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SFRP5Q5T4F7 317 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 OLFML2BQ68BL8 750 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 HAUS3Q68CZ6 603 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SASS6Q6UVJ0 657 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 METTL7BQ6UX53 244 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 C11orf57Q6ZUT1 292 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 CCDC60Q8IWA6 550 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 MSL3Q8N5Y2 521 aaKnown RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 DNAJC5GQ8N7S2 189 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SYT2Q8N9I0 419 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 TRPV1Q8NER1 839 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 RDM1Q8NG50 284 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SCFD2Q8WU76 684 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 SMARCE1Q969G3 411 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 ACSF2Q96CM8 615 aaPredicted RBP3.92□□□□□ -1.78
MCF2-202ENST00000370573 DNAJC19Q96DA6 116 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 GPR20Q99678 358 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 CDC6Q99741 560 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 RHOBTB2Q9BYZ6 727 aa3.92□□□□□ -1.78
MCF2-202ENST00000370573 TRIM9Q9C026 710 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms