RNA–Protein interactions for RNA: ENST00000368662.9

TUBE1-202, Transcript of tubulin epsilon 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TUBE1, Length 2,142 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-202ENST00000368662 SNX25Q9H3E2 840 aa13.13□□□□□ -0.31
TUBE1-202ENST00000368662 NRDE2Q9H7Z3 1164 aa13.13□□□□□ -0.31
TUBE1-202ENST00000368662 GOLGA6L9A6NEM1 432 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 MED7O43513 233 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 KIF4AO95239 1232 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 GNL1P36915 607 aaPredicted RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 GATMP50440 423 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 RAD23BP54727 409 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 GFPT1Q06210 699 aaPredicted RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 TIGD5Q53EQ6 642 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 ZNF394Q53GI3 561 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 TMEM240Q5SV17 173 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 GLYCTKQ8IVS8 523 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 CMTR2Q8IYT2 770 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 PDCL2Q8N4E4 241 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 OR6B3Q8NGW1 331 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 WHAMMQ8TF30 809 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 KBTBD7Q8WVZ9 684 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 DDX1Q92499 740 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SUSD3Q96L08 255 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 MRPL45Q9BRJ2 306 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SPTLC3Q9NUV7 552 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 CACNG4Q9UBN1 327 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 DNAJB4Q9UDY4 337 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 FAN1Q9Y2M0 1017 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 PPP2R2CQ9Y2T4 447 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 NR2E3Q9Y5X4 410 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 A0A087X0T9 212 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 A8MXQ7 604 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 ESPNB1AK53 854 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 THAP12O43422 761 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 TADA2AO75478 443 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 CYP11A1P05108 521 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 FAM228BP0C875 321 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SYN1P17600 705 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 ALDH7A1P49419 539 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 STILQ15468 1287 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 PPP1R2P3Q6NXS1 205 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 TRIM72Q6ZMU5 477 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 METTL23Q86XA0 190 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SLC4A11Q8NBS3 891 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SLC30A5Q8TAD4 765 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SLC20A1Q8WUM9 679 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 ZNF606Q8WXB4 792 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 HERVK_113Q902F9 699 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 TNIP3Q96KP6 325 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.12□□□□□ -0.314e-13■■□□□ 13.6
TUBE1-202ENST00000368662 DESI2Q9BSY9 194 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 PDCL3Q9H2J4 239 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 RC3H2Q9HBD1 1191 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 ACP6Q9NPH0 428 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 SEPT11Q9NVA2 429 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 PUF60Q9UHX1 559 aaKnown RBP13.12□□□□□ -0.31
TUBE1-202ENST00000368662 NAGPAQ9UK23 515 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 STXBP5LQ9Y2K9 1186 aa13.12□□□□□ -0.31
TUBE1-202ENST00000368662 DDX3XO00571 662 aaKnown RBP eCLIP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 GABRDO14764 452 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 NRP1O14786 923 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 B4GALT3O60512 393 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 VDRP11473 427 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 GZMAP12544 262 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 TYMPP19971 482 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 ELAVL2Q12926 359 aaKnown RBP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 TAF3Q5VWG9 929 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 ALKBH5Q6P6C2 394 aaKnown RBP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 CCAR2Q8N163 923 aaKnown RBP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 PHOSPHO2Q8TCD6 241 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 RABGGTAQ92696 567 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 SLC9A7Q96T83 725 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 ELOVL4Q9GZR5 314 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 ADAM28Q9UKQ2 775 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 ZMYND8Q9ULU4 1186 aaPredicted RBP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 PRG3Q9Y2Y8 225 aaPredicted RBP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 FNDC1Q4ZHG4 1894 aaPredicted RBP13.11□□□□□ -0.31
TUBE1-202ENST00000368662 ATP8B3O60423 1300 aa13.11□□□□□ -0.31
TUBE1-202ENST00000368662 GALTP07902 379 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 MMEP08473 750 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 CD19P15391 556 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 FMO1Q01740 532 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 PAN2Q504Q3 1202 aaKnown RBP13.1□□□□□ -0.31
TUBE1-202ENST00000368662 SGO2Q562F6 1265 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 CCDC122Q5T0U0 273 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 WSCD1Q658N2 575 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 CD300LGQ6UXG3 332 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 ACRBPQ8NEB7 543 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 LNX1Q8TBB1 728 aaPredicted RBP13.1□□□□□ -0.31
TUBE1-202ENST00000368662 HEXIM2Q96MH2 286 aaKnown RBP13.1□□□□□ -0.31
TUBE1-202ENST00000368662 YME1L1Q96TA2 773 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 HMGXB4Q9UGU5 601 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 PCDHB8Q9UN66 801 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 PCDHGC3Q9UN70 934 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 SF3B1O75533 1304 aaKnown RBP eCLIP13.1□□□□□ -0.317e-6■■■■■ 70.2
TUBE1-202ENST00000368662 ZNF263O14978 683 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 SYN3O14994 580 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 GJB5O95377 273 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 LSM8O95777 96 aaKnown RBP13.1□□□□□ -0.31
TUBE1-202ENST00000368662 CHRNB2P17787 502 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 PCSK1P29120 753 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 BRCC3P46736 316 aa13.1□□□□□ -0.31
TUBE1-202ENST00000368662 SLC11A1P49279 550 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms