RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MTMR11A4FU01 709 aa15.05■□□□□ -0
VPS29-201ENST00000360579 SLC16A4O15374 487 aa15.05■□□□□ -0
VPS29-201ENST00000360579 EXTL3O43909 919 aa15.05■□□□□ -0
VPS29-201ENST00000360579 KCNK5O95279 499 aa15.05■□□□□ -0
VPS29-201ENST00000360579 LARGE1O95461 756 aa15.05■□□□□ -0
VPS29-201ENST00000360579 PROS1P07225 676 aa15.05■□□□□ -0
VPS29-201ENST00000360579 CLTAP09496 248 aa15.05■□□□□ -0
VPS29-201ENST00000360579 TUFMP49411 452 aaKnown RBP15.05■□□□□ -0
VPS29-201ENST00000360579 MCL1Q07820 350 aa15.05■□□□□ -0
VPS29-201ENST00000360579 TNK2Q07912 1038 aa15.05■□□□□ -0
VPS29-201ENST00000360579 VEPH1Q14D04 833 aa15.05■□□□□ -0
VPS29-201ENST00000360579 KYAT1Q16773 422 aa15.05■□□□□ -0
VPS29-201ENST00000360579 KRT79Q5XKE5 535 aa15.05■□□□□ -0
VPS29-201ENST00000360579 KBTBD6Q86V97 674 aa15.05■□□□□ -0
VPS29-201ENST00000360579 GPIHBP1Q8IV16 184 aa15.05■□□□□ -0
VPS29-201ENST00000360579 CAMKK1Q8N5S9 505 aa15.05■□□□□ -0
VPS29-201ENST00000360579 IGSF22Q8N9C0 903 aa15.05■□□□□ -0
VPS29-201ENST00000360579 EXOC4Q96A65 974 aa15.05■□□□□ -0
VPS29-201ENST00000360579 ZBTB45Q96K62 511 aaPredicted RBP15.05■□□□□ -0
VPS29-201ENST00000360579 ZC3H10Q96K80 434 aaKnown RBP15.05■□□□□ -0
VPS29-201ENST00000360579 NOL7Q9UMY1 257 aaKnown RBP15.05■□□□□ -0
VPS29-201ENST00000360579 SLC27A5Q9Y2P5 690 aa15.05■□□□□ -0
VPS29-201ENST00000360579 TTC26A0AVF1 554 aa15.04■□□□□ -0
VPS29-201ENST00000360579 E9PMD0 336 aa15.04■□□□□ -0
VPS29-201ENST00000360579 MAP3K13O43283 966 aa15.04■□□□□ -0
VPS29-201ENST00000360579 PRAMEF12O95522 483 aa15.04■□□□□ -0
VPS29-201ENST00000360579 CXCL8P10145 99 aa15.04■□□□□ -0
VPS29-201ENST00000360579 ODC1P11926 461 aa15.04■□□□□ -0
VPS29-201ENST00000360579 GUCY2CP25092 1073 aa15.04■□□□□ -0
VPS29-201ENST00000360579 MPLP40238 635 aa15.04■□□□□ -0
VPS29-201ENST00000360579 MATR3P43243 847 aaKnown RBP eCLIP15.04■□□□□ -0
VPS29-201ENST00000360579 GUCY1B3Q02153 619 aa15.04■□□□□ -0
VPS29-201ENST00000360579 PPP2R3AQ06190 1150 aa15.04■□□□□ -0
VPS29-201ENST00000360579 MAPK7Q13164 816 aa15.04■□□□□ -0
VPS29-201ENST00000360579 GNL2Q13823 731 aaKnown RBP15.04■□□□□ -0
VPS29-201ENST00000360579 CCDC6Q16204 474 aa15.04■□□□□ -0
VPS29-201ENST00000360579 SEZ6Q53EL9 994 aa15.04■□□□□ -0
VPS29-201ENST00000360579 TMEM196Q5HYL7 178 aa15.04■□□□□ -0
VPS29-201ENST00000360579 RINT1Q6NUQ1 792 aa15.04■□□□□ -0
VPS29-201ENST00000360579 C1orf186Q6ZWK4 172 aa15.04■□□□□ -0
VPS29-201ENST00000360579 ATAD1Q8NBU5 361 aa15.04■□□□□ -0
VPS29-201ENST00000360579 C8orf76Q96K31 380 aa15.04■□□□□ -0
VPS29-201ENST00000360579 RUSC1Q9BVN2 902 aa15.04■□□□□ -0
VPS29-201ENST00000360579 CITO14578 2027 aa15.04■□□□□ -0
VPS29-201ENST00000360579 GREB1Q4ZG55 1949 aa15.04■□□□□ -0
VPS29-201ENST00000360579 PDCD11Q14690 1871 aaKnown RBP15.03■□□□□ -0
VPS29-201ENST00000360579 FRYQ5TBA9 3013 aa15.03■□□□□ -0
VPS29-201ENST00000360579 ASPMQ8IZT6 3477 aa15.03■□□□□ -0
VPS29-201ENST00000360579 H0YCG3 227 aa15.03■□□□□ -0
VPS29-201ENST00000360579 MAPTP10636 758 aaKnown RBP15.03■□□□□ -0
VPS29-201ENST00000360579 PLS3P13797 630 aa15.03■□□□□ -0
VPS29-201ENST00000360579 PXNP49023 591 aaPredicted RBP15.03■□□□□ -0
VPS29-201ENST00000360579 KARSQ15046 597 aaKnown RBP15.03■□□□□ -0
VPS29-201ENST00000360579 ELF2Q15723 593 aa15.03■□□□□ -0
VPS29-201ENST00000360579 ZBTB6Q15916 424 aa15.03■□□□□ -0
VPS29-201ENST00000360579 TAF12Q16514 161 aa15.03■□□□□ -0
VPS29-201ENST00000360579 RNF43Q68DV7 783 aa15.03■□□□□ -0
VPS29-201ENST00000360579 C4orf32Q8N8J7 132 aa15.03■□□□□ -0
VPS29-201ENST00000360579 TMEM161BQ8NDZ6 487 aa15.03■□□□□ -0
VPS29-201ENST00000360579 FAM212AQ96EL1 285 aa15.03■□□□□ -0
VPS29-201ENST00000360579 RXFP3Q9NSD7 469 aa15.03■□□□□ -0
VPS29-201ENST00000360579 LAD1O00515 517 aa15.02■□□□□ -0
VPS29-201ENST00000360579 TRDMT1O14717 391 aaKnown RBP15.02■□□□□ -0
VPS29-201ENST00000360579 RHOBTB1O94844 696 aa15.02■□□□□ -0
VPS29-201ENST00000360579 AVPR1AP37288 418 aa15.02■□□□□ -0
VPS29-201ENST00000360579 LILRA4P59901 499 aa15.02■□□□□ -0
VPS29-201ENST00000360579 SPAG1Q07617 926 aa15.02■□□□□ -0
VPS29-201ENST00000360579 SMARCB1Q12824 385 aa15.02■□□□□ -0
VPS29-201ENST00000360579 RUNX3Q13761 415 aa15.02■□□□□ -0
VPS29-201ENST00000360579 FBXO43Q4G163 708 aa15.02■□□□□ -0
VPS29-201ENST00000360579 KCTD17Q8N5Z5 321 aa15.02■□□□□ -0
VPS29-201ENST00000360579 C2orf15Q8WU43 125 aaKnown RBP15.02■□□□□ -0
VPS29-201ENST00000360579 BICD1Q96G01 975 aa15.02■□□□□ -0
VPS29-201ENST00000360579 SEPT5Q99719 369 aaPredicted RBP15.02■□□□□ -0
VPS29-201ENST00000360579 FAM83CQ9BQN1 747 aa15.02■□□□□ -0
VPS29-201ENST00000360579 GKN1Q9NS71 199 aa15.02■□□□□ -0
VPS29-201ENST00000360579 DSEQ9UL01 958 aa15.02■□□□□ -0
VPS29-201ENST00000360579 ATRXP46100 2492 aa15.02□□□□□ -0.01
VPS29-201ENST00000360579 SOBPA7XYQ1 873 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 SFI1A8K8P3 1242 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 SOAT2O75908 522 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 DRD1P21728 446 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 SCP2P22307 547 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 DDX6P26196 483 aaKnown RBP eCLIP15.01□□□□□ -0.01
VPS29-201ENST00000360579 HOXC13P31276 330 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 CYP4F8P98187 520 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 BFSP1Q12934 665 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 MGAT5BQ3V5L5 792 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 PLK5Q496M5 336 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 DAB2IPQ5VWQ8 1189 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 FSTL4Q6MZW2 842 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 PSAPL1Q6NUJ1 521 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 PKN3Q6P5Z2 889 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 CD302Q8IX05 232 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 CMTM8Q8IZV2 173 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 TTC9BQ8N6N2 239 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 SENP8Q96LD8 212 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 SLC46A2Q9BY10 475 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 KIF9Q9HAQ2 790 aa15.01□□□□□ -0.01
VPS29-201ENST00000360579 KCND2Q9NZV8 630 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms