RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RPLP2P05387 115 aaKnown RBP13.63□□□□□ -0.23
CLK3-201ENST00000345005 HSPA1AP0DMV8 641 aaKnown RBP13.63□□□□□ -0.23
CLK3-201ENST00000345005 HSPA1BP0DMV9 641 aaKnown RBP13.63□□□□□ -0.23
CLK3-201ENST00000345005 GNA15P30679 374 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 MDH1P40925 334 aaKnown RBP13.63□□□□□ -0.23
CLK3-201ENST00000345005 SLC7A5Q01650 507 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 GUCY2DQ02846 1103 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 TRIM32Q13049 653 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 CLUL1Q15846 466 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 PPP2R5EQ16537 467 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 ZNF667Q5HYK9 610 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 SPDYCQ5MJ68 293 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 PPP1R2P3Q6NXS1 205 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 CXCL17Q6UXB2 119 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 PEX26Q7Z412 305 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 DAAM2Q86T65 1068 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 RSPH3Q86UC2 560 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 C1orf127Q8N9H9 656 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 TSEN2Q8NCE0 465 aaKnown RBP13.63□□□□□ -0.23
CLK3-201ENST00000345005 ARL8AQ96BM9 186 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 ARHGEF26Q96DR7 871 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 SRRDQ9UH36 339 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 GTF2IRD1Q9UHL9 959 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 SIX4Q9UIU6 781 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 ITGA11Q9UKX5 1188 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 DERAQ9Y315 318 aa13.63□□□□□ -0.23
CLK3-201ENST00000345005 CCDC188H7C350 402 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 TRPA1O75762 1119 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 PRKAR2AP13861 404 aaKnown RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 MAP2K2P36507 400 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 MNAT1P51948 309 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 ZNF132P52740 706 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 YARSP54577 528 aaKnown RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 PTGISQ16647 500 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 SCARA3Q6AZY7 606 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 CELF4Q9BZC1 486 aaKnown RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 VRTNQ9H8Y1 702 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 OSGEPQ9NPF4 335 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 CISHQ9NSE2 258 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 CTTNBP2NLQ9P2B4 639 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 AMFRQ9UKV5 643 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 M0QZ92 97 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 ADAMTS4O75173 837 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 MTA2O94776 668 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 KIF4AO95239 1232 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 GNRH1P01148 92 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 HMGCRP04035 888 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 ITGB3P05106 788 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 CYP1A2P05177 515 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 MYZAPP0CAP1 466 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 UNGP13051 313 aaPredicted RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 P4HA1P13674 534 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 CALRP27797 417 aaKnown RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 CCND3P30281 292 aaPredicted RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 RBP5P82980 135 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 CAP1Q01518 475 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 AGBL2Q5U5Z8 902 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 ACTRT1Q8TDG2 376 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 TRIM11Q96F44 468 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 TRIM6Q9C030 488 aaPredicted RBP13.62□□□□□ -0.23
CLK3-201ENST00000345005 DPP3Q9NY33 737 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 GTF3C4Q9UKN8 822 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 NFU1Q9UMS0 254 aa13.62□□□□□ -0.23
CLK3-201ENST00000345005 THAP12O43422 761 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 BUB1BO60566 1050 aaPredicted RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 CYP1A1P04798 512 aaPredicted RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 GLI1P08151 1106 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 MYBL1P10243 752 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 ELNP15502 786 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 CST5P28325 142 aaPredicted RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 CXCR5P32302 372 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 ASPAP45381 313 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 MRPS6P82932 125 aaKnown RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 NT5DC3Q86UY8 548 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 USP38Q8NB14 1042 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 PCSK9Q8NBP7 692 aaKnown RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 KLHDC9Q8NEP7 349 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 CXorf38Q8TB03 319 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 TMEM40Q8WWA1 233 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 IFT81Q8WYA0 676 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 ZNF653Q96CK0 615 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 KIF12Q96FN5 646 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 TSPAN18Q96SJ8 248 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 EIF2AQ9BY44 585 aaKnown RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 BCO2Q9BYV7 579 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 CXorf56Q9H5V9 222 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 FAM124BQ9H5Z6 455 aaPredicted RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 CYP3A43Q9HB55 503 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 SNTG2Q9NY99 539 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 UVRAGQ9P2Y5 699 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 NXF1Q9UBU9 619 aaKnown RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 TMEM59LQ9UK28 342 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 PIN4Q9Y237 131 aaKnown RBP13.61□□□□□ -0.23
CLK3-201ENST00000345005 STXBP5LQ9Y2K9 1186 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 CAPN7Q9Y6W3 813 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 SCN1AP35498 2009 aa13.61□□□□□ -0.23
CLK3-201ENST00000345005 STAU1O95793 577 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 CALCAP01258 141 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 ASGR1P07306 291 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 WEE2P0C1S8 567 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms