RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 ADAM33Q9BZ11 813 aa13.36□□□□□ -0.27
LIMK1-201ENST00000336180 ARHGAP39Q9C0H5 1083 aa13.36□□□□□ -0.27
LIMK1-201ENST00000336180 C2orf40Q9H1Z8 148 aa13.36□□□□□ -0.27
LIMK1-201ENST00000336180 NXF3Q9H4D5 531 aaKnown RBP13.36□□□□□ -0.27
LIMK1-201ENST00000336180 TUBGCP4Q9UGJ1 667 aa13.36□□□□□ -0.27
LIMK1-201ENST00000336180 A0A0G2JMZ2 1700 aa13.36□□□□□ -0.27
LIMK1-201ENST00000336180 LOC285556D6RIA3 1793 aa13.36□□□□□ -0.27
LIMK1-201ENST00000336180 TREHO43280 583 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 TSPAN1O60635 241 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 CTSHP09668 335 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 POU5F1Q01860 360 aaKnown RBP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PDCLQ13371 301 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 NNTQ13423 1086 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 CDO1Q16878 200 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 SH3PXD2AQ5TCZ1 1133 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 FMNL3Q8IVF7 1028 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 CCDC33Q8N5R6 958 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PIWIL1Q96J94 861 aaKnown RBP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 HEXIM2Q96MH2 286 aaKnown RBP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ZMAT2Q96NC0 199 aaKnown RBP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 RNF39Q9H2S5 420 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PCDHA3Q9Y5H8 950 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ZSCAN5DPP0CG00 497 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ETS1P14921 441 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 NRLP54845 237 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 CENPCQ03188 943 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ZNF252P-AS1Q0IIN9 211 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 TAF5Q15542 800 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 SGSM1Q2NKQ1 1148 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PTPN20Q4JDL3 420 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 CAPN12Q6ZSI9 719 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ENOSF1Q7L5Y1 443 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ELOVL4Q9GZR5 314 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ASIC3Q9UHC3 531 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 GJD2Q9UKL4 321 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 TTC7AQ9ULT0 858 aaPredicted RBP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 MYADML2A6NDP7 307 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ZC3H11AO75152 810 aaKnown RBP eCLIP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PDGFRBP09619 1106 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PROZP22891 400 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 LIN9Q5TKA1 542 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 DNAJC24Q6P3W2 148 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 ERICH1Q86X53 443 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 GLIS1Q8NBF1 620 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 PARK7Q99497 189 aaKnown RBP13.35□□□□□ -0.27
LIMK1-201ENST00000336180 WNT8AQ9H1J5 351 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 UVRAGQ9P2Y5 699 aa13.35□□□□□ -0.27
LIMK1-201ENST00000336180 CCDC188H7C350 402 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 SMIM10L2AP0DMW4 78 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 SMIM10L2BP0DMW5 78 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 C7orf31Q8N865 590 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 SHCBP1Q8NEM2 672 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 HPDLQ96IR7 371 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 CPXM1Q96SM3 734 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 VTA1Q9NP79 307 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 TNFSF13BQ9Y275 285 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 SNX9Q9Y5X1 595 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 M0QYV0 167 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 PHF2O75151 1096 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 PPFIA4O75335 1185 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 CYP2C9P11712 490 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 TBXAS1P24557 533 aaPredicted RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 RFC1P35251 1148 aaPredicted RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 PTGIRP43119 386 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 PTP4A2Q12974 167 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 GRB14Q14449 540 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 SIX1Q15475 284 aaPredicted RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 DUSP28Q4G0W2 176 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 TLK2Q86UE8 772 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 ERP44Q9BS26 406 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 PRMT7Q9NVM4 692 aaPredicted RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 MIF4GDA9UHW6 222 aaKnown RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 COILP38432 576 aaPredicted RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 AARSP49588 968 aaKnown RBP eCLIP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 BPIFB4P59827 614 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 GUCY1A3Q02108 690 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 ADCY1Q08828 1119 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 TRIM32Q13049 653 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 DGKDQ16760 1214 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 ZNF484Q5JVG2 852 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 ZNF618Q5T7W0 954 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 FAM76AQ8TAV0 307 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 MORC4Q8TE76 937 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 RAPGEF5Q92565 580 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 CAVIN3Q969G5 261 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 FMO2Q99518 471 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 TSPYL1Q9H0U9 437 aa13.34□□□□□ -0.27
LIMK1-201ENST00000336180 PIN4Q9Y237 131 aaKnown RBP13.34□□□□□ -0.27
LIMK1-201ENST00000336180 MGAMO43451 1857 aa13.33□□□□□ -0.27
LIMK1-201ENST00000336180 MEIS3P2A8K0S8 358 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 KIAA0391O15091 583 aaKnown RBP13.33□□□□□ -0.28
LIMK1-201ENST00000336180 PIAS1O75925 651 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 PGK1P00558 417 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 HNRNPH2P55795 449 aaKnown RBP13.33□□□□□ -0.28
LIMK1-201ENST00000336180 KRT17Q04695 432 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 TMEM132DQ14C87 1099 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 FAM47CQ5HY64 1035 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 ACOT1Q86TX2 421 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 VTI1AQ96AJ9 217 aa13.33□□□□□ -0.28
LIMK1-201ENST00000336180 MRRFQ96E11 262 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms