RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 FASTKD1Q53R41 847 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 RNF149Q8NC42 400 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 RBBP8NLQ8NC74 664 aaPredicted RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 EPS8L3Q8TE67 593 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 TMEM39BQ9GZU3 492 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 EML4Q9HC35 981 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 C20orf96Q9NUD7 363 aaPredicted RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 ALG6Q9Y672 507 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TCRBV5S4A2TA0A5A2 114 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 M0QYV0 167 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 COILP38432 576 aaPredicted RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 KCNMA1Q12791 1236 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 KIAA1841Q6NSI8 718 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 ADGRA1Q86SQ6 560 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 COG4Q9H9E3 785 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 CAPN6Q9Y6Q1 641 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 SMAPO00193 183 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 NEMP1O14524 444 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 SNX2O60749 519 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 SLC4A1P02730 911 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 SNRPAP09012 282 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 SDC4P31431 198 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 FNTAP49354 379 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 ARPP19P56211 112 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 TRADDQ15628 312 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 TRAF7Q6Q0C0 670 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 IZUMO2Q6UXV1 221 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 SCUBE1Q8IWY4 988 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 TBC1D4O60343 1298 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 CIITAP33076 1130 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 KCNJ1P48048 391 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 CCDC85BQ15834 202 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 EZH2Q15910 746 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 LMBRD2Q68DH5 695 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 YTHDF3Q7Z739 585 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 CLEC4FQ8N1N0 589 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 RTFDC1Q9BY42 306 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 ZC3H7BQ9UGR2 993 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 ABT1Q9ULW3 272 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 LOC100653049A0A140TA62 436 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 EIF3DO15371 548 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS39-201ENST00000318006 FKBP6O75344 327 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 RPS6KA5O75582 802 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 KRT34O76011 436 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 RARGP13631 454 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 COMTP21964 271 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 CALB2P22676 271 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 ABCE1P61221 599 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 ARID3BQ8IVW6 561 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 KLF6Q99612 283 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 FAM217BQ9NTX9 383 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 SHPRHQ149N8 1683 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 SLC37A4O43826 429 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 TXNP10599 105 aaKnown RBP12.03□□□□□ -0.48
VPS39-201ENST00000318006 ACTR2P61160 394 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 CDK17Q00537 523 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 CENPCQ03188 943 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 IRGCQ6NXR0 463 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 C3orf62Q6ZUJ4 267 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 ZNF507Q8TCN5 953 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 MKNK1Q9BUB5 465 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 PCMTD2Q9NV79 361 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 AIPL1Q9NZN9 384 aa12.03□□□□□ -0.48
VPS39-201ENST00000318006 WEE2P0C1S8 567 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 CDH2P19022 906 aaPredicted RBP12.02□□□□□ -0.48
VPS39-201ENST00000318006 HLA-DPA1P20036 260 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 SNRNP35Q16560 246 aaKnown RBP12.02□□□□□ -0.48
VPS39-201ENST00000318006 ZC2HC1CQ53FD0 456 aaPredicted RBP12.02□□□□□ -0.48
VPS39-201ENST00000318006 ANGPTL8Q6UXH0 198 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 PRUNE1Q86TP1 453 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 PCYOX1LQ8NBM8 494 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 TPCN2Q8NHX9 752 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 FAM210AQ96ND0 272 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 KLHL25Q9H0H3 589 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 UNC45AQ9H3U1 944 aa12.02□□□□□ -0.48
VPS39-201ENST00000318006 SRP72O76094 671 aaKnown RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 PRKCBP05771 671 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 SLC9A1P19634 815 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 NFIAQ12857 509 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 ZC3H12BQ5HYM0 836 aaKnown RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 FAM192AQ9GZU8 254 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 MYOZ2Q9NPC6 264 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 CDY2AQ9Y6F7 541 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 CDY1Q9Y6F8 540 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 C3P01024 1663 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 MAFGO15525 162 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 KRT16P08779 473 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 SERPINB8P50452 374 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 GEMIN4P57678 1058 aaKnown RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 AGBL3Q8NEM8 1001 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 SEPT1Q8WYJ6 367 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 TMEM143Q96AN5 459 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 ZDHHC15Q96MV8 337 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 GOLPH3Q9H4A6 298 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 ELP3Q9H9T3 547 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 DUSP10Q9Y6W6 482 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 BCL9O00512 1426 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 TNS2Q63HR2 1409 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 PJA2O43164 708 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms