RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ITIH3Q06033 890 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 NFX1Q12986 1120 aaKnown RBP16.54■□□□□ 0.24
LSM6-201ENST00000296581 C9orf57Q5W0N0 161 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 PASD1Q8IV76 773 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 NUP85Q9BW27 656 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 KLK14Q9P0G3 267 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 AMFRQ9UKV5 643 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 PPEF2O14830 753 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 CAND2O75155 1236 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 SLC4A11Q8NBS3 891 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 ZNF564Q8TBZ8 553 aaPredicted RBP16.54■□□□□ 0.24
LSM6-201ENST00000296581 CAGE1Q8TC20 777 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 TWNKQ96RR1 684 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 ELOVL4Q9GZR5 314 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 FAM105AQ9NUU6 356 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 TRIM17Q9Y577 477 aa16.54■□□□□ 0.24
LSM6-201ENST00000296581 HTTP42858 3142 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 PIRO00625 290 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 TLR3O15455 904 aaKnown RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 GYS2P54840 703 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 C1QBPQ07021 282 aaKnown RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 PTP4A2Q12974 167 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 GPR161Q8N6U8 529 aaKnown RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 PBKQ96KB5 322 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 OSBPL7Q9BZF2 842 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 ZNF518BQ9C0D4 1074 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 CHORDC1Q9UHD1 332 aaPredicted RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 BARX2Q9UMQ3 279 aaPredicted RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 NOD1Q9Y239 953 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 SQORQ9Y6N5 450 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 PCNTO95613 3336 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 A0A1W2PQ45 241 aaPredicted RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 A0A1W2PQY0 241 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 MYO1CO00159 1063 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 RRM1P23921 792 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 SSTR3P32745 418 aaPredicted RBP16.53■□□□□ 0.24
LSM6-201ENST00000296581 LPIN1Q14693 890 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 TMEM176AQ96HP8 235 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 TRAIPQ9BWF2 469 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.53■□□□□ 0.24
LSM6-201ENST00000296581 HMGXB4Q9UGU5 601 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 PADI3Q9ULW8 664 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 PHF24Q9UPV7 400 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 ALG6Q9Y672 507 aa16.53■□□□□ 0.24
LSM6-201ENST00000296581 MED7O43513 233 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 ATF7P17544 494 aaPredicted RBP16.52■□□□□ 0.24
LSM6-201ENST00000296581 MMP8P22894 467 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 DSC3Q14574 896 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 MRPL10Q7Z7H8 261 aaKnown RBP16.52■□□□□ 0.24
LSM6-201ENST00000296581 C10orf67Q8IYJ2 551 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 HACE1Q8IYU2 909 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 NOA1Q8NC60 698 aaKnown RBP16.52■□□□□ 0.24
LSM6-201ENST00000296581 TMEM35BQ8NCS4 154 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 RPS6KC1Q96S38 1066 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 C11orf70Q9BRQ4 267 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 LHX5Q9H2C1 402 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 ADAM22Q9P0K1 906 aa16.52■□□□□ 0.24
LSM6-201ENST00000296581 CENPFP49454 3210 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 PTGESO14684 152 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 TRIM66O15016 1216 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 GHRP10912 638 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 CD52P31358 61 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 PAFAH1B1P43034 410 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 DNA2P51530 1060 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 SOX4Q06945 474 aaPredicted RBP16.52■□□□□ 0.23
LSM6-201ENST00000296581 PAK2Q13177 524 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 CFAP221Q4G0U5 840 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 LIN9Q5TKA1 542 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 WDTC1Q8N5D0 677 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 USP38Q8NB14 1042 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 PPP1R10Q96QC0 940 aaKnown RBP16.52■□□□□ 0.23
LSM6-201ENST00000296581 RNF19AQ9NV58 838 aa16.52■□□□□ 0.23
LSM6-201ENST00000296581 KCNK3O14649 394 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 DDX3YO15523 660 aaKnown RBP16.51■□□□□ 0.23
LSM6-201ENST00000296581 ITGA4P13612 1032 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 CD19P15391 556 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 LRPAP1P30533 357 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 PNPLA4P41247 253 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 PTPROQ16827 1216 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 ZNF618Q5T7W0 954 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 CCDC181Q5TID7 509 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 PLEKHA7Q6IQ23 1121 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 MMS22LQ6ZRQ5 1243 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 ZNF560Q96MR9 790 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 STARD7Q9NQZ5 370 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 EHD2Q9NZN4 543 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 SNX9Q9Y5X1 595 aa16.51■□□□□ 0.23
LSM6-201ENST00000296581 ZNF623O75123 536 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 VDRP11473 427 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 RAB27AP51159 221 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 NDST1P52848 882 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 MSANTD4Q8NCY6 345 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 C1orf131Q8NDD1 294 aaKnown RBP16.5■□□□□ 0.23
LSM6-201ENST00000296581 SH3TC2Q8TF17 1288 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 MS4A14Q96JA4 679 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 KIAA1257Q9ULG3 409 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 MIF4GDA9UHW6 222 aaKnown RBP16.5■□□□□ 0.23
LSM6-201ENST00000296581 MESDQ14696 234 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 DENND1BQ6P3S1 775 aa16.5■□□□□ 0.23
LSM6-201ENST00000296581 TRAF7Q6Q0C0 670 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms