RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TAF2Q6P1X5 1199 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 SRLQ86TD4 932 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 EIF1ADQ8N9N8 165 aaKnown RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 RIN2Q8WYP3 895 aaPredicted RBP16.26■□□□□ 0.19
SF3B4-201ENST00000271628 SH3GL2Q99962 352 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 LHX5Q9H2C1 402 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 EPB41L5Q9HCM4 733 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 SNTG2Q9NY99 539 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 GOLGA6AQ9NYA3 693 aa16.26■□□□□ 0.19
SF3B4-201ENST00000271628 RAD51CO43502 376 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 SHOX2O60902 331 aaPredicted RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 CYBAP13498 195 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 BRD2P25440 801 aaKnown RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 GUCY2DQ02846 1103 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 MAMLD1Q13495 774 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 SNX17Q15036 470 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 GNASQ5JWF2 1037 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 MMS22LQ6ZRQ5 1243 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 TSPAN18Q96SJ8 248 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 MTG1Q9BT17 334 aaPredicted RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 GPBP1L1Q9HC44 474 aaPredicted RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 MRPS25P82663 173 aaKnown RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 TAP1Q03518 808 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 ZNF211Q13398 564 aaPredicted RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 PAXIP1Q6ZW49 1069 aaPredicted RBP16.25■□□□□ 0.19
SF3B4-201ENST00000271628 TMEM176AQ96HP8 235 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 STRIP2Q9ULQ0 834 aa16.25■□□□□ 0.19
SF3B4-201ENST00000271628 A6NNZ2 444 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 TLR3O15455 904 aaKnown RBP16.24■□□□□ 0.19
SF3B4-201ENST00000271628 CILPO75339 1184 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 PROSCO94903 275 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 CD19P15391 556 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 CDH8P55286 799 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 SLC20A2Q08357 652 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 PAK2Q13177 524 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 TUBB8Q3ZCM7 444 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 ERICH1Q86X53 443 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 TRPV1Q8NER1 839 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 BEST2Q8NFU1 509 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 FEZF2Q8TBJ5 459 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 TRIB2Q92519 343 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 SNX27Q96L92 541 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 ZIC5Q96T25 663 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 DDX47Q9H0S4 455 aaKnown RBP16.24■□□□□ 0.19
SF3B4-201ENST00000271628 RALGAPA2Q2PPJ7 1873 aa16.24■□□□□ 0.19
SF3B4-201ENST00000271628 MYO1CO00159 1063 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 ITGA4P13612 1032 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 SSTR3P32745 418 aaPredicted RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 FLT3LGP49771 235 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 RAD23BP54727 409 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 NKX3-2P78367 333 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 ZNF200P98182 395 aaPredicted RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 NOGQ13253 232 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 C2CD6Q53TS8 623 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 REM2Q8IYK8 340 aaPredicted RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 C1orf131Q8NDD1 294 aaKnown RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 PPP1R13LQ8WUF5 828 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 TFAP2BQ92481 460 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 HINFPQ9BQA5 517 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 EIF2AQ9BY44 585 aaKnown RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 MTUS1Q9ULD2 1270 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 KIAA1257Q9ULG3 409 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 PIN4Q9Y237 131 aaKnown RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 RRP15Q9Y3B9 282 aaKnown RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 TRIP12Q14669 1992 aaPredicted RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 SEPT4O43236 478 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 HSF2BPO75031 334 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 RPLP2P05387 115 aaKnown RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 RARBP10826 455 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 PYGMP11217 842 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 MAN1A1P33908 653 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 RAP1GAPP47736 663 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 MARCKSL1P49006 195 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 PTPN11Q06124 597 aaPredicted RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 INCA1Q0VD86 236 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 ZBTB6Q15916 424 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 ALKAL1Q6UXT8 129 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 SLC4A11Q8NBS3 891 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 RUFY1Q96T51 708 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 SDCBP2Q9H190 292 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 UPF3AQ9H1J1 476 aaKnown RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 SMYD3Q9H7B4 428 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 CNTN3Q9P232 1028 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 IP6K2Q9UHH9 426 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 BARX2Q9UMQ3 279 aaPredicted RBP16.23■□□□□ 0.19
SF3B4-201ENST00000271628 GABRQQ9UN88 632 aa16.23■□□□□ 0.19
SF3B4-201ENST00000271628 M0QZ92 97 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 XPOTO43592 962 aaKnown RBP16.22■□□□□ 0.19
SF3B4-201ENST00000271628 VDRP11473 427 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 CUL1Q13616 776 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 CYP4F22Q6NT55 531 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 RSPH3Q86UC2 560 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 WDTC1Q8N5D0 677 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 LRRC52Q8N7C0 313 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 WHAMMQ8TF30 809 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 TMEM40Q8WWA1 233 aa16.22■□□□□ 0.19
SF3B4-201ENST00000271628 CELF4Q9BZC1 486 aaKnown RBP16.22■□□□□ 0.19
SF3B4-201ENST00000271628 ARHGAP39Q9C0H5 1083 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms