RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CDH16O75309 829 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 MAPTP10636 758 aaKnown RBP10.63□□□□□ -0.71
LIG3-201ENST00000262327 PECAM1P16284 738 aaPredicted RBP10.63□□□□□ -0.71
LIG3-201ENST00000262327 ATP5DP30049 168 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 PEX19P40855 299 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 ARSEP51690 589 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 KLF1Q13351 362 aaPredicted RBP10.63□□□□□ -0.71
LIG3-201ENST00000262327 MAMLD1Q13495 774 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 ZNF268Q14587 947 aaPredicted RBP10.63□□□□□ -0.71
LIG3-201ENST00000262327 EFTUD2Q15029 972 aaKnown RBP eCLIP10.63□□□□□ -0.713e-6■■■■□ 23.7
LIG3-201ENST00000262327 WDR44Q5JSH3 913 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 MFSD7Q6UXD7 560 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 ARHGEF18Q6ZSZ5 1173 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 C4orf19Q8IY42 314 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 ZNF280CQ8ND82 737 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 GRK7Q8WTQ7 553 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 C12orf42Q96LP6 360 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 MFSD14AQ96MC6 490 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 RXFP1Q9HBX9 757 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 NEU2Q9Y3R4 380 aa10.63□□□□□ -0.71
LIG3-201ENST00000262327 ADM5C9JUS6 153 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 F8VP50 259 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 H0Y3Z8 333 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 GNA15P30679 374 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 RPA3P35244 121 aaPredicted RBP10.62□□□□□ -0.71
LIG3-201ENST00000262327 LIG4P49917 911 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 BACE1P56817 501 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 BAATQ14032 418 aaPredicted RBP10.62□□□□□ -0.71
LIG3-201ENST00000262327 ZBED8Q8IZ13 594 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 ZBTB10Q96DT7 871 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 TMEM121Q9BTD3 319 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 PRKAG3Q9UGI9 489 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 C15orf41Q9Y2V0 281 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 PCDHB2Q9Y5E7 798 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 CBX6O95503 412 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 GCAP28676 217 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 IREB2P48200 963 aaKnown RBP10.62□□□□□ -0.71
LIG3-201ENST00000262327 NRLP54845 237 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 SLC1A5Q15758 541 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 MON1BQ7L1V2 547 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 RHOT1Q8IXI2 618 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 CCDC89Q8N998 374 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 MAGEC3Q8TD91 643 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 SLCO2A1Q92959 643 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 UTP4Q969X6 686 aaKnown RBP10.62□□□□□ -0.71
LIG3-201ENST00000262327 MAGEB18Q96M61 343 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 ZNF570Q96NI8 536 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 IWS1Q96ST2 819 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 PDCD2LQ9BRP1 358 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 TRABDQ9H4I3 376 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 KIAA1586Q9HCI6 787 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 XPNPEP1Q9NQW7 623 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 TBC1D22BQ9NU19 505 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 NKX1-2Q9UD57 310 aaPredicted RBP10.62□□□□□ -0.71
LIG3-201ENST00000262327 IVNS1ABPQ9Y6Y0 642 aa10.62□□□□□ -0.71
LIG3-201ENST00000262327 FAM47DPA6NHR8 397 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 VNN1O95497 513 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 KRT1P04264 644 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 FGFR1P11362 822 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 CA4P22748 312 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 OVGP1Q12889 678 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 STRN3Q13033 797 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 MTFR1Q15390 333 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 SMTNL2Q2TAL5 461 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 NLRX1Q86UT6 975 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 TMEM130Q8N3G9 435 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 OR5B17Q8NGF7 314 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 RSRC1Q96IZ7 334 aaKnown RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 CCDC77Q9BR77 488 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 HAPLN2Q9GZV7 340 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 POLR3FQ9H1D9 316 aaPredicted RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 PHTF1Q9UMS5 762 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 SNUPNO95149 360 aaKnown RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 IL9RQ01113 521 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 NFX1Q12986 1120 aaKnown RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 CCNG2Q16589 344 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 CYP4A22Q5TCH4 519 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 TRIM68Q6AZZ1 485 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 CCDC60Q8IWA6 550 aaPredicted RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 MAML1Q92585 1016 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 CDCA5Q96FF9 252 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 ZNF668Q96K58 619 aaPredicted RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 MCEEQ96PE7 176 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 ARHGEF3Q9NR81 526 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 DCTN4Q9UJW0 460 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 CHKBQ9Y259 395 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 LRRIQ4A6NIV6 560 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 KLRC2P26717 231 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 RPS6KA3P51812 740 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 NOMO3P69849 1222 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 GCNT1Q02742 428 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 PDIA2Q13087 525 aaKnown RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 MTMR2Q13614 643 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 KCNT1Q5JUK3 1230 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 LIN9Q5TKA1 542 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 RBBP8NLQ8NC74 664 aaPredicted RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 TMC2Q8TDI7 906 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 ST6GALNAC4Q9H4F1 302 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 EBF2Q9HAK2 575 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms