RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W FRM2P37261 193 aa2.09□□□□□ -2.07
PRE1YER012W YGL159WP53110 370 aa2.09□□□□□ -2.07
PRE1YER012W NQM1P53228 333 aaPredicted RBP2.09□□□□□ -2.07
PRE1YER012W OKP1P53298 406 aa2.09□□□□□ -2.07
PRE1YER012W YNR064CP53750 290 aa2.09□□□□□ -2.07
PRE1YER012W YDC1Q02896 317 aa2.09□□□□□ -2.07
PRE1YER012W SNZ1Q03148 297 aa2.09□□□□□ -2.07
PRE1YER012W YMD8Q03697 442 aa2.09□□□□□ -2.07
PRE1YER012W GMC1Q04399 608 aa2.09□□□□□ -2.07
PRE1YER012W MEU1Q07938 337 aaKnown RBP RIP-Chip data2.09□□□□□ -2.07not detected
PRE1YER012W USB1Q12208 290 aaKnown RBP2.09□□□□□ -2.07
PRE1YER012W HUT1Q12520 339 aa2.09□□□□□ -2.07
PRE1YER012W YOR192C-CQ3E736 78 aa2.09□□□□□ -2.07
PRE1YER012W RIB3Q99258 208 aa2.09□□□□□ -2.07
PRE1YER012W TDH3P00359 332 aaKnown RBP RIP-Chip data2.08□□□□□ -2.08not detected
PRE1YER012W PHO80P20052 293 aa2.08□□□□□ -2.08
PRE1YER012W APA2P22108 325 aa2.08□□□□□ -2.08
PRE1YER012W MRS4P23500 304 aa2.08□□□□□ -2.08
PRE1YER012W IMP1P28627 190 aa2.08□□□□□ -2.08
PRE1YER012W ARO4P32449 370 aaKnown RBP2.08□□□□□ -2.08
PRE1YER012W YKL102CP34249 101 aa2.08□□□□□ -2.08
PRE1YER012W SRP102P36057 244 aaPredicted RBP2.08□□□□□ -2.08
PRE1YER012W YKL070WP36087 169 aa2.08□□□□□ -2.08
PRE1YER012W SMP1P38128 452 aa2.08□□□□□ -2.08
PRE1YER012W FIG1P38224 298 aa2.08□□□□□ -2.08
PRE1YER012W YBR285WP38354 144 aa2.08□□□□□ -2.08
PRE1YER012W CUE1P38428 203 aa2.08□□□□□ -2.08
PRE1YER012W YHL044WP38727 235 aa2.08□□□□□ -2.08
PRE1YER012W PET8P38921 284 aa2.08□□□□□ -2.08
PRE1YER012W SOP4P39543 234 aaPredicted RBP2.08□□□□□ -2.08
PRE1YER012W FAR7P43592 221 aa2.08□□□□□ -2.08
PRE1YER012W YJL016WP47072 561 aa2.08□□□□□ -2.08
PRE1YER012W GEP7P53171 287 aa2.08□□□□□ -2.08
PRE1YER012W VHT1P53241 593 aa2.08□□□□□ -2.08
PRE1YER012W ADH6Q04894 360 aaKnown RBP2.08□□□□□ -2.08
PRE1YER012W MRX8Q05473 314 aa2.08□□□□□ -2.08
PRE1YER012W ATO3Q12359 275 aa2.08□□□□□ -2.08
PRE1YER012W MSW1P04803 379 aa2.07□□□□□ -2.08
PRE1YER012W RPL30P14120 105 aaKnown RBP2.07□□□□□ -2.08
PRE1YER012W RPL5P26321 297 aaKnown RBP2.07□□□□□ -2.08
PRE1YER012W ASF2P32448 525 aaPredicted RBP2.07□□□□□ -2.08
PRE1YER012W ERG24P32462 438 aaKnown RBP2.07□□□□□ -2.08
PRE1YER012W KTI12P34253 313 aaKnown RBP2.07□□□□□ -2.08
PRE1YER012W YPC1P38298 316 aa2.07□□□□□ -2.08
PRE1YER012W FMP33P46998 180 aa2.07□□□□□ -2.08
PRE1YER012W FMP48P53233 369 aa2.07□□□□□ -2.08
PRE1YER012W AAH1P53909 347 aa2.07□□□□□ -2.08
PRE1YER012W YDR248CQ03786 193 aa2.07□□□□□ -2.08
PRE1YER012W YLR173WQ06247 608 aa2.07□□□□□ -2.08
PRE1YER012W PRP11Q07350 266 aaPredicted RBP2.07□□□□□ -2.08
PRE1YER012W VIK1Q12045 647 aa2.07□□□□□ -2.08
PRE1YER012W TDH1P00360 332 aaKnown RBP2.06□□□□□ -2.08
PRE1YER012W CDC28P00546 298 aaKnown RBP2.06□□□□□ -2.08
PRE1YER012W ADK1P07170 222 aaKnown RBP2.06□□□□□ -2.08
PRE1YER012W BGL2P15703 313 aaKnown RBP2.06□□□□□ -2.08
PRE1YER012W SWD2P36104 329 aaPredicted RBP2.06□□□□□ -2.08
PRE1YER012W YBR096WP38256 230 aa2.06□□□□□ -2.08
PRE1YER012W AVT6P40074 448 aa2.06□□□□□ -2.08
PRE1YER012W FMC1P40491 155 aa2.06□□□□□ -2.08
PRE1YER012W UFD1P53044 361 aa2.06□□□□□ -2.08
PRE1YER012W LAP3Q01532 483 aaKnown RBP RIP-Chip data2.06□□□□□ -2.08not detected
PRE1YER012W GPI17Q04080 534 aa2.06□□□□□ -2.08
PRE1YER012W MRX9Q07349 420 aaKnown RBP2.06□□□□□ -2.08
PRE1YER012W RFU1Q08003 200 aa2.06□□□□□ -2.08
PRE1YER012W FMP16Q12497 93 aa2.06□□□□□ -2.08
PRE1YER012W YIL002W-AQ3E7Z5 69 aa2.06□□□□□ -2.08
PRE1YER012W FBA1P14540 359 aaKnown RBP2.05□□□□□ -2.08
PRE1YER012W MRPL20P22354 195 aaPredicted RBP2.05□□□□□ -2.08
PRE1YER012W ARO7P32178 256 aa2.05□□□□□ -2.08
PRE1YER012W YKR045CP36138 183 aa2.05□□□□□ -2.08
PRE1YER012W SSH1P38353 490 aaKnown RBP2.05□□□□□ -2.08
PRE1YER012W EGD2P38879 174 aaKnown RBP2.05□□□□□ -2.08
PRE1YER012W RRT13P40042 185 aa2.05□□□□□ -2.08
PRE1YER012W ERJ5P43613 295 aaPredicted RBP2.05□□□□□ -2.08
PRE1YER012W COX16P47081 118 aa2.05□□□□□ -2.08
PRE1YER012W COG5P53951 403 aa2.05□□□□□ -2.08
PRE1YER012W YKR005CQ02203 525 aa2.05□□□□□ -2.08
PRE1YER012W MIX17Q03667 156 aa2.05□□□□□ -2.08
PRE1YER012W YMR244WQ04018 355 aa2.05□□□□□ -2.08
PRE1YER012W GAL83Q04739 417 aa2.05□□□□□ -2.08
PRE1YER012W YMR315WQ04869 349 aaKnown RBP2.05□□□□□ -2.08
PRE1YER012W YOL029CQ08187 201 aa2.05□□□□□ -2.08
PRE1YER012W YAL067W-AQ8TGK6 75 aa2.05□□□□□ -2.08
PRE1YER012W RPL31AP0C2H8 113 aaKnown RBP2.04□□□□□ -2.08
PRE1YER012W BUD23P25627 275 aaPredicted RBP2.04□□□□□ -2.08
PRE1YER012W INO2P26798 304 aa2.04□□□□□ -2.08
PRE1YER012W AUA1P32450 94 aa2.04□□□□□ -2.08
PRE1YER012W YKL063CP35725 167 aa2.04□□□□□ -2.08
PRE1YER012W THO1P40040 218 aaKnown RBP2.04□□□□□ -2.08
PRE1YER012W RIO2P40160 425 aaKnown RBP2.04□□□□□ -2.08
PRE1YER012W DLS1P40366 167 aa2.04□□□□□ -2.08
PRE1YER012W CCC1P47818 322 aa2.04□□□□□ -2.08
PRE1YER012W PAU12P53343 120 aa2.04□□□□□ -2.08
PRE1YER012W TLG1Q03322 224 aa2.04□□□□□ -2.08
PRE1YER012W DIG2Q03373 323 aaKnown RBP2.04□□□□□ -2.08
PRE1YER012W MAK3Q03503 176 aa2.04□□□□□ -2.08
PRE1YER012W YLR283WQ05867 314 aa2.04□□□□□ -2.08
PRE1YER012W UTP23Q12339 254 aaKnown RBP2.04□□□□□ -2.08
PRE1YER012W PRM4Q12498 284 aa2.04□□□□□ -2.08
PRE1YER012W YOL085CQ99345 113 aa2.04□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 91.5 ms