RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 POTEDQ86YR6 584 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 ZBTB8OSQ8IWT0 167 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 DEFB124Q8NES8 71 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 POLR3BQ9NW08 1133 aaPredicted RBP17.89■□□□□ 0.45
CLN3-264ENST00000637985 USP20Q9Y2K6 914 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 GPSM3Q9Y4H4 160 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 CACNA1EQ15878 2313 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 SMIM28A0A1B0GU29 152 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 BTBD18B2RXH4 712 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 ACKR2O00590 384 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 ZIC2O95409 532 aaPredicted RBP17.88■□□□□ 0.45
CLN3-264ENST00000637985 EDN1P05305 212 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 PLCB2Q00722 1185 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 KARSQ15046 597 aaKnown RBP17.88■□□□□ 0.45
CLN3-264ENST00000637985 MAPK6Q16659 721 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 TMEM132AQ24JP5 1023 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 RNF19BQ6ZMZ0 732 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 PROSER1Q86XN7 944 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 DIS3L2Q8IYB7 885 aaKnown RBP17.88■□□□□ 0.45
CLN3-264ENST00000637985 BEST2Q8NFU1 509 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 HHIPQ96QV1 700 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 EIF2AK1Q9BQI3 630 aaKnown RBP17.88■□□□□ 0.45
CLN3-264ENST00000637985 CCDC113Q9H0I3 377 aa17.88■□□□□ 0.45
CLN3-264ENST00000637985 DAXXQ9UER7 740 aaPredicted RBP17.88■□□□□ 0.45
CLN3-264ENST00000637985 NUP210Q8TEM1 1887 aaPredicted RBP17.88■□□□□ 0.45
CLN3-264ENST00000637985 FAM221BA6H8Z2 402 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 FAM205CA6NFA0 338 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 PODXLO00592 558 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 DPYSL4O14531 572 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 GRSF1Q12849 480 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLN3-264ENST00000637985 DCAF4L1Q3SXM0 396 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 XKR4Q5GH76 650 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 PDZD3Q86UT5 571 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 LLPHQ9BRT6 129 aaKnown RBP17.87■□□□□ 0.45
CLN3-264ENST00000637985 DNAJC25Q9H1X3 360 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 C2orf40Q9H1Z8 148 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 EBF1Q9UH73 591 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 YIPF1Q9Y548 306 aa17.87■□□□□ 0.45
CLN3-264ENST00000637985 TRDMT1O14717 391 aaKnown RBP17.86■□□□□ 0.45
CLN3-264ENST00000637985 USO1O60763 962 aaKnown RBP17.86■□□□□ 0.45
CLN3-264ENST00000637985 ST3GAL1Q11201 340 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 PTPAQ15257 358 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 ZNF280DQ6N043 979 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 C19orf48Q6RUI8 117 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 ALKAL1Q6UXT8 129 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 MAEAQ7L5Y9 396 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 BPIFB1Q8TDL5 484 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 CHFRQ96EP1 664 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 ZSCAN31Q96LW9 406 aaPredicted RBP17.86■□□□□ 0.45
CLN3-264ENST00000637985 CCDC43Q96MW1 224 aaKnown RBP17.86■□□□□ 0.45
CLN3-264ENST00000637985 PCDHA12Q9UN75 941 aa17.86■□□□□ 0.45
CLN3-264ENST00000637985 PATE3B3GLJ2 98 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 RNF40O75150 1001 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 VNN2O95498 520 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 PRAMEF12O95522 483 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 XRCC6P12956 609 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLN3-264ENST00000637985 WEE1P30291 646 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 IRX4P78413 519 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 SAFBQ15424 915 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLN3-264ENST00000637985 CALCRLQ16602 461 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 UAP1L1Q3KQV9 507 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 C8orf34Q49A92 452 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 PMS2CLQ68D20 193 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 GAREM2Q75VX8 874 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 PIGOQ8TEQ8 1089 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 BSNDQ8WZ55 320 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 SUSD3Q96L08 255 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 SLC38A7Q9NVC3 462 aa17.85■□□□□ 0.45
CLN3-264ENST00000637985 A0A087WWV3 80 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 MEFVO15553 781 aaPredicted RBP17.84■□□□□ 0.45
CLN3-264ENST00000637985 NEMFO60524 1076 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 APBB3O95704 486 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 EGFP01133 1207 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 EPHB3P54753 998 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 PLD1Q13393 1074 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 SYT13Q7L8C5 426 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 CCDC83Q8IWF9 413 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 MCPH1Q8NEM0 835 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 DDX12PQ92771 950 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 ZMAT2Q96NC0 199 aaKnown RBP17.84■□□□□ 0.45
CLN3-264ENST00000637985 FAM83CQ9BQN1 747 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 SLC32A1Q9H598 525 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 NUB1Q9Y5A7 615 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 THADAQ6YHU6 1953 aa17.84■□□□□ 0.45
CLN3-264ENST00000637985 CELSR3Q9NYQ7 3312 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 OTOL1A6NHN0 477 aaPredicted RBP17.83■□□□□ 0.44
CLN3-264ENST00000637985 CPB1P15086 417 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 GBP1P32455 592 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 RPL9P32969 192 aaKnown RBP17.83■□□□□ 0.44
CLN3-264ENST00000637985 MCM2P49736 904 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 FOSBP53539 338 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 GPR158Q5T848 1215 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 APPL2Q8NEU8 664 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 C8orf76Q96K31 380 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 MTMR9Q96QG7 549 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 KIF2CQ99661 725 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 CRISPLD1Q9H336 500 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 ATXN3LQ9H3M9 355 aa17.83■□□□□ 0.44
CLN3-264ENST00000637985 TTC12Q9H892 705 aaPredicted RBP17.83■□□□□ 0.44
CLN3-264ENST00000637985 FBRSL1Q9HCM7 1045 aaKnown RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms