RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 GOLGA6BA6NDN3 693 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 POLR3GO15318 223 aaPredicted RBP19.58■□□□□ 0.72
CLN3-263ENST00000637871 FAM189A1O60320 539 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 PQBP1O60828 265 aaKnown RBP19.58■□□□□ 0.72
CLN3-263ENST00000637871 HSF2BPO75031 334 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 ASS1P00966 412 aaKnown RBP19.58■□□□□ 0.72
CLN3-263ENST00000637871 FGGP02679 453 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 TRIM60Q495X7 471 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 KLHL7Q8IXQ5 586 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 MCOLN2Q8IZK6 566 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 SEC14L1Q92503 715 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 PI4K2AQ9BTU6 479 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 FAM124BQ9H5Z6 455 aaPredicted RBP19.58■□□□□ 0.72
CLN3-263ENST00000637871 CNOT8Q9UFF9 292 aaKnown RBP19.58■□□□□ 0.72
CLN3-263ENST00000637871 MTUS1Q9ULD2 1270 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 UTP11Q9Y3A2 253 aaKnown RBP19.58■□□□□ 0.72
CLN3-263ENST00000637871 PCDHB4Q9Y5E5 795 aa19.58■□□□□ 0.72
CLN3-263ENST00000637871 H3BQF6 201 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 ARVCFO00192 962 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 ABLIM1O14639 778 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 CTNNA1P35221 906 aaKnown RBP19.57■□□□□ 0.72
CLN3-263ENST00000637871 NSFP46459 744 aaKnown RBP19.57■□□□□ 0.72
CLN3-263ENST00000637871 CDC42EP1Q00587 391 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 MESDQ14696 234 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 GRIK4Q16099 956 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 ATF7IP2Q5U623 682 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 RHPN2Q8IUC4 686 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 CD101Q93033 1021 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 LRRC45Q96CN5 670 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 ZNF518BQ9C0D4 1074 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 TRPV6Q9H1D0 765 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 GTF2IRD1Q9UHL9 959 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 ATP11BQ9Y2G3 1177 aa19.57■□□□□ 0.72
CLN3-263ENST00000637871 KAT6AQ92794 2004 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 GOLGA8KD6RF30 607 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 SPOPO43791 374 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 TNNC2P02585 160 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 COMTP21964 271 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 CHRNA3P32297 505 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 PEX5P50542 639 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 DRG2P55039 364 aaKnown RBP19.56■□□□□ 0.72
CLN3-263ENST00000637871 RWDD2BP57060 319 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 RNASE9P60153 205 aaKnown RBP19.56■□□□□ 0.72
CLN3-263ENST00000637871 DRP2Q13474 957 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 PHF13Q86YI8 300 aaPredicted RBP19.56■□□□□ 0.72
CLN3-263ENST00000637871 SLC43A3Q8NBI5 491 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 ANKRD36BP1Q96IX9 119 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 RUFY1Q96T51 708 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 RASAL2Q9UJF2 1139 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.56■□□□□ 0.72
CLN3-263ENST00000637871 SCINQ9Y6U3 715 aa19.56■□□□□ 0.72
CLN3-263ENST00000637871 C22orf31O95567 290 aa19.55■□□□□ 0.72
CLN3-263ENST00000637871 LSM8O95777 96 aaKnown RBP19.55■□□□□ 0.72
CLN3-263ENST00000637871 CARSP49589 748 aaKnown RBP19.55■□□□□ 0.72
CLN3-263ENST00000637871 C1QBPQ07021 282 aaKnown RBP19.55■□□□□ 0.72
CLN3-263ENST00000637871 PTP4A2Q12974 167 aa19.55■□□□□ 0.72
CLN3-263ENST00000637871 TRPC3Q13507 836 aa19.55■□□□□ 0.72
CLN3-263ENST00000637871 MARCH8Q5T0T0 291 aa19.55■□□□□ 0.72
CLN3-263ENST00000637871 C1orf131Q8NDD1 294 aaKnown RBP19.55■□□□□ 0.72
CLN3-263ENST00000637871 FAM129AQ9BZQ8 928 aa19.55■□□□□ 0.72
CLN3-263ENST00000637871 C17orf102A2RUQ5 167 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 A6NNZ2 444 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 PODXLO00592 558 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 TREHO43280 583 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 MCF2P10911 925 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 GNA15P30679 374 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 CDK7P50613 346 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 ZNF132P52740 706 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 TUBB8Q3ZCM7 444 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 SPDYCQ5MJ68 293 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 LRRC71Q8N4P6 559 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 UBR7Q8N806 425 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 RBBP8NLQ8NC74 664 aaPredicted RBP19.54■□□□□ 0.72
CLN3-263ENST00000637871 OR5B17Q8NGF7 314 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 CASKIN2Q8WXE0 1202 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 IFT81Q8WYA0 676 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 AP1M1Q9BXS5 423 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 NIF3L1Q9GZT8 377 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 RPF1Q9H9Y2 349 aaKnown RBP19.54■□□□□ 0.72
CLN3-263ENST00000637871 APOBEC3GQ9HC16 384 aaKnown RBP19.54■□□□□ 0.72
CLN3-263ENST00000637871 ST7Q9NRC1 585 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 ADAM21Q9UKJ8 722 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 NFU1Q9UMS0 254 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 PTPRJQ12913 1337 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 INO80B-WBP1J3KQ70 363 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 MYO1FO00160 1098 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 ERLIN2O94905 339 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 EDN1P05305 212 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 TMEM191BP0C7N4 346 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 HOXC8P31273 242 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 WNT7BP56706 349 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 TLE2Q04725 743 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 MBTD1Q05BQ5 628 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 MTMR3Q13615 1198 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 SNX17Q15036 470 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 ZNF568Q3ZCX4 644 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 LMBRD2Q68DH5 695 aaPredicted RBP19.54■□□□□ 0.72
CLN3-263ENST00000637871 TMEM270Q6UE05 265 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 RUFY4Q6ZNE9 571 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 APBB1IPQ7Z5R6 666 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms