RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LRRIQ4A6NIV6 560 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 C19orf81C9J6K1 198 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 GJB6O95452 261 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 EDN1P05305 212 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 COPS2P61201 443 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM63BQ5T3F8 832 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 CATSPERGQ6ZRH7 1159 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF606Q8WXB4 792 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 JDP2Q8WYK2 163 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 MAML1Q92585 1016 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 PICK1Q9NRD5 415 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 PRKAG3Q9UGI9 489 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 HACL1Q9UJ83 578 aa13.52□□□□□ -0.24
LINC00540-203ENST00000631321 SUN1O94901 812 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 CALB1P05937 261 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 RFC5P40937 340 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 MAGEA4P43358 317 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 HMGCS2P54868 508 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 TGFB2P61812 414 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 TARBP2Q15633 366 aaKnown RBP13.52□□□□□ -0.25
LINC00540-203ENST00000631321 EAPPQ56P03 285 aaPredicted RBP13.52□□□□□ -0.25
LINC00540-203ENST00000631321 ARHGEF18Q6ZSZ5 1173 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 TDRPQ86YL5 185 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 BRSK2Q8IWQ3 736 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 SLC7A3Q8WY07 619 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 MAGEB18Q96M61 343 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 FAM118BQ9BPY3 351 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 KCNK9Q9NPC2 374 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 DRG1Q9Y295 367 aaKnown RBP13.52□□□□□ -0.25
LINC00540-203ENST00000631321 USTQ9Y2C2 406 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 PHIPQ8WWQ0 1821 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 KIAA1217Q5T5P2 1943 aa13.52□□□□□ -0.25
LINC00540-203ENST00000631321 DNALI1O14645 258 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ASS1P00966 412 aaKnown RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 EN1Q05925 392 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ZNF252P-AS1Q0IIN9 211 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 P3H1Q32P28 736 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 PREPLQ4J6C6 727 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 WLSQ5T9L3 541 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ZPBP2Q6X784 338 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 PPP1R21Q6ZMI0 780 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 CCDC91Q7Z6B0 441 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ALLCQ8N6M5 410 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 GBP7Q8N8V2 638 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ANKRD42Q8N9B4 389 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 CCDC63Q8NA47 563 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 RBM15Q96T37 977 aaKnown RBP eCLIP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ARL2BPQ9Y2Y0 163 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ADCY3O60266 1144 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 FAM189A1O60320 539 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 TJP3O95049 919 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 GSCP56915 257 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 RPL7AP62424 266 aaKnown RBP13.51□□□□□ -0.25
LINC00540-203ENST00000631321 NR1H3Q13133 447 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 RIPK1Q13546 671 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 STXBP2Q15833 593 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 PPP1R15BQ5SWA1 713 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 MFSD7Q6UXD7 560 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 GSTA5Q7RTV2 222 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 SPATA21Q7Z572 469 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 WDR49Q8IV35 697 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 DNERQ8NFT8 737 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 C9orf72Q96LT7 481 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 CFAP57Q96MR6 1250 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 TTC25Q96NG3 672 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ZNF518BQ9C0D4 1074 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 ANKFY1Q9P2R3 1169 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 DNPEPQ9ULA0 475 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 CD2APQ9Y5K6 639 aa13.51□□□□□ -0.25
LINC00540-203ENST00000631321 FOXO6A8MYZ6 492 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 UBOX5O94941 541 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 GH1P01241 217 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 SSTR3P32745 418 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 CDH5P33151 784 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 SSR1P43307 286 aaKnown RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 SLC18A1P54219 525 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 TAP1Q03518 808 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 ATP13A4Q4VNC1 1196 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 NUGGCQ68CJ6 796 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 SPOCD1Q6ZMY3 1216 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 MICALL2Q8IY33 904 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 ANKRD35Q8N283 1001 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 NIPA2Q8N8Q9 360 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 WRNIP1Q96S55 665 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 IMPG2Q9BZV3 1241 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 FHDC1Q9C0D6 1143 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 UBN1Q9NPG3 1134 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 NKIRAS1Q9NYS0 192 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 AGAP1Q9UPQ3 857 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 IVNS1ABPQ9Y6Y0 642 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 COL11A1P12107 1806 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 KRT1P04264 644 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 TCF4P15884 667 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 GCAP28676 217 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 RXRBP28702 533 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 GJC1P36383 396 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 CAPSQ13938 189 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 MORF4L2Q15014 288 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 OASLQ15646 514 aaKnown RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 FAM133BQ5BKY9 247 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms