RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 DCDC2Q9UHG0 476 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 STARD13Q9Y3M8 1113 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 NFIBO00712 420 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 XRCC4Q13426 336 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 ERMARDQ5T6L9 678 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 POTEGQ6S5H5 508 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 USP49Q70CQ1 688 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 C1orf131Q8NDD1 294 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 ARHGEF1Q92888 912 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 MRPS26Q9BYN8 205 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 PLGRKTQ9HBL7 147 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 COPG2Q9UBF2 871 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 TRIM49P0CI25 452 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 TRIM49CP0CI26 452 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 FCGR1AP12314 374 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 SOX6P35712 828 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 ACTR2P61160 394 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 DMPKQ09013 629 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 MICU2Q8IYU8 434 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 TSEN2Q8NCE0 465 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 TRPC4APQ8TEL6 797 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 C18orf8Q96DM3 657 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 FAM111AQ96PZ2 611 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 SLC13A4Q9UKG4 626 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 CFAP99D6REC4 459 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 KCNN4O15554 427 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 SNX3O60493 162 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 UNC5CO95185 931 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 KCNJ1P48048 391 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 RABL6Q3YEC7 729 aaPredicted RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 HABP4Q5JVS0 413 aaKnown RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 SCARA5Q6ZMJ2 495 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 ZNF554Q86TJ5 538 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CREG2Q8IUH2 290 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 KRT35Q92764 455 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 METTL5Q9NRN9 209 aaKnown RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 KCND2Q9NZV8 630 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 PCSK1NQ9UHG2 260 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 EFCAB6Q5THR3 1501 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 ATP8B3O60423 1300 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 SLC9A1P19634 815 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CNTFP26441 200 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 ALDH1B1P30837 517 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CDH6P55285 790 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 LACTB2Q53H82 288 aaPredicted RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 MARK2Q7KZI7 788 aaKnown RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 GPD1LQ8N335 351 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 TSPAN17Q96FV3 270 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 FAR2Q96K12 515 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 FSD1LQ9BXM9 530 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 APPL1Q9UKG1 709 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 A0A087X0T9 212 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 FAM228BP0C875 321 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 EPHB2P29323 1055 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CHN2P52757 468 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 MTFR1Q15390 333 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 ZNF699Q32M78 642 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 THEMIS2Q5TEJ8 643 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 C1orf228Q6PIY5 440 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 NDUFAF2Q8N183 169 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 STX19Q8N4C7 294 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 FBXO25Q8TCJ0 367 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 AGR3Q8TD06 166 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 DDX18Q9NVP1 670 aaKnown RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 TMEM260Q9NX78 707 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 UBAP1Q9NZ09 502 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 HPS5Q9UPZ3 1129 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 MYRFQ9Y2G1 1151 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 LOC100653049A0A140TA62 436 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 KRT34O76011 436 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 NDUFA5Q16718 116 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CEP78Q5JTW2 689 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 FLAD1Q8NFF5 587 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 TMEM117Q9H0C3 514 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 GOLGA8TH3BQL2 631 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 FAM153BP0C7A2 387 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 HLA-DPA1P20036 260 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 SARSP49591 514 aaKnown RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 DMC1Q14565 340 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 DLGAP5Q15398 846 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CCDC85BQ15834 202 aaPredicted RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 FAM153CQ494X1 144 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 NET1Q7Z628 596 aaPredicted RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 STKLD1Q8NE28 680 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 C1orf50Q9BV19 199 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 ILKAPQ9H0C8 392 aaPredicted RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 RAB6BQ9NRW1 208 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 ABCF3Q9NUQ8 709 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 PRKAG2Q9UGJ0 569 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 SLCO1B7G3V0H7 640 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 UBXN2AP68543 259 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 TTI2Q6NXR4 508 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CLEC4GQ6UXB4 293 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 KRT27Q7Z3Y8 459 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 RMND5BQ96G75 393 aaPredicted RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 PAGR1Q9BTK6 254 aa9.31□□□□□ -0.92
VCL-206ENST00000623461 CPSF3Q9UKF6 684 aaKnown RBP9.31□□□□□ -0.92
VCL-206ENST00000623461 PYGLP06737 847 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 FXR2P51116 673 aaKnown RBP eCLIP9.3□□□□□ -0.921e-7■■■■□ 19.6
VCL-206ENST00000623461 ANTXR2P58335 489 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms