RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TAX1BP1Q86VP1 789 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 FAM71AQ8IYT1 594 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 PAF1Q8N7H5 531 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 PCSK9Q8NBP7 692 aaKnown RBP16.7■□□□□ 0.26
CPSF1-213ENST00000620219 HELQQ8TDG4 1101 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 NT5C1AQ9BXI3 368 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 SCINQ9Y6U3 715 aa16.7■□□□□ 0.26
CPSF1-213ENST00000620219 CASTOR2A6NHX0 329 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 KYAT1Q16773 422 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 C17orf99Q6UX52 265 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 AMACRQ9UHK6 382 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 TLL2Q9Y6L7 1015 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 PTPRJQ12913 1337 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 C4BPAP04003 597 aaKnown RBP16.69■□□□□ 0.26
CPSF1-213ENST00000620219 LCP1P13796 627 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 CFAP58Q5T655 872 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 C18orf8Q96DM3 657 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 GAD1Q99259 594 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 PDZD7Q9H5P4 517 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 ZNF148Q9UQR1 794 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 MROH7Q68CQ1 1323 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 WNT7BP56706 349 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 KRT81Q14533 505 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 DAB2IPQ5VWQ8 1189 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 TAF2Q6P1X5 1199 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 TSHZ1Q6ZSZ6 1077 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 ZC3H3Q8IXZ2 948 aaKnown RBP16.69■□□□□ 0.26
CPSF1-213ENST00000620219 APPL2Q8NEU8 664 aa16.69■□□□□ 0.26
CPSF1-213ENST00000620219 PRG3Q9Y2Y8 225 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-213ENST00000620219 DUSP11O75319 330 aaKnown RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 ANXA13P27216 316 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 MCL1Q07820 350 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 DDX42Q86XP3 938 aaKnown RBP eCLIP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 C18orf25Q96B23 403 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 PCDHB18PQ96TA0 734 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 FZD8Q9H461 694 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 HMX1Q9NP08 348 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 PDLIM7Q9NR12 457 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 TSPAN1O60635 241 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 B3GAT3O94766 335 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 CALB1P05937 261 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 TUBBP07437 444 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 SNX17Q15036 470 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 AADACL2Q6P093 401 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 RIN2Q8WYP3 895 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 TRIB2Q92519 343 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 MRRFQ96E11 262 aaKnown RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 APOBEC3GQ9HC16 384 aaKnown RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 STIM2Q9P246 746 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 UBQLN1Q9UMX0 589 aaKnown RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 DOCK1Q14185 1865 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 PJA2O43164 708 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 ZRANB2O95218 330 aaKnown RBP eCLIP16.68■□□□□ 0.266e-7■■■■□ 22.1
CPSF1-213ENST00000620219 EDN1P05305 212 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 KRT3P12035 628 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 SNX16P57768 344 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 FMO1Q01740 532 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 ZNF354CQ86Y25 554 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 EFCAB13Q8IY85 973 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 C1orf54Q8WWF1 131 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 CPSF3Q9UKF6 684 aaKnown RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 GTF3C4Q9UKN8 822 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 PPP6R3Q5H9R7 873 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-213ENST00000620219 TRIM72Q6ZMU5 477 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 ZNF560Q96MR9 790 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 FBXL5Q9UKA1 691 aa16.68■□□□□ 0.26
CPSF1-213ENST00000620219 KAT6AQ92794 2004 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 DAPK3O43293 454 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 DARSP14868 501 aaKnown RBP16.67■□□□□ 0.26
CPSF1-213ENST00000620219 ACAT1P24752 427 aaKnown RBP16.67■□□□□ 0.26
CPSF1-213ENST00000620219 CCND3P30281 292 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-213ENST00000620219 NDST1P52848 882 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 JAM2P57087 298 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 EMC1Q8N766 993 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 ZFP42Q96MM3 310 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 CELF4Q9BZC1 486 aaKnown RBP16.67■□□□□ 0.26
CPSF1-213ENST00000620219 HAPLN2Q9GZV7 340 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 ASB7Q9H672 318 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 PARVAQ9NVD7 372 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 MYADML2A6NDP7 307 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 PLTPP55058 493 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 SMTNL2Q2TAL5 461 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.67■□□□□ 0.261e-8■■■□□ 15.2
CPSF1-213ENST00000620219 STRA6Q9BX79 667 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 DNAJC17Q9NVM6 304 aaKnown RBP16.67■□□□□ 0.26
CPSF1-213ENST00000620219 ST3GAL5Q9UNP4 418 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 A6NJR5 290 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 PQBP1O60828 265 aaKnown RBP16.67■□□□□ 0.26
CPSF1-213ENST00000620219 SASH3O75995 380 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 CD52P31358 61 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 MAMDC4Q6UXC1 1216 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 METTL23Q86XA0 190 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 IFT122Q9HBG6 1241 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 RNF14Q9UBS8 474 aa16.67■□□□□ 0.26
CPSF1-213ENST00000620219 TAF12Q16514 161 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 C1orf220Q5T0J3 134 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 MEI1Q5TIA1 1274 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 CRELD2Q6UXH1 353 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 SIX6OS1Q8N1H7 587 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 RNF208Q9H0X6 261 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms