RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 PKD2L1Q9P0L9 805 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 DDX25Q9UHL0 483 aaKnown RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 ANAPC7Q9UJX3 599 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 C15orf38-AP3S2A0A0A6YYH1 394 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 A0A0A6YYK5 440 aaPredicted RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 TMEM247A6NEH6 219 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 E9PMD0 336 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 CYP4A11Q02928 519 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 NFIXQ14938 502 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 GJB7Q6PEY0 223 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 ARPINQ7Z6K5 226 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 DHDDSQ86SQ9 333 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 NUP85Q9BW27 656 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 PRDM16Q9HAZ2 1276 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 SMAPO00193 183 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 ZNF24P17028 368 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 ARL4CP56559 192 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 OTUD4Q01804 1114 aaKnown RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 TMC5Q6UXY8 1006 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 JADE3Q92613 823 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 PCDHA6Q9UN73 950 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 CARD8Q9Y2G2 431 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 PCDHA8Q9Y5H6 950 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 GJA3Q9Y6H8 435 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 POTECB2RU33 542 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 GOLGA8TH3BQL2 631 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 MEIS1O00470 390 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 KLRC4O43908 158 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 KRT8P05787 483 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 MMP10P09238 476 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 HSPA13P48723 471 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 ATXN3P54252 364 aaPredicted RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 FOLH1Q04609 750 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 TTLL12Q14166 644 aaPredicted RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 FSCBQ5H9T9 825 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 TMEM63BQ5T3F8 832 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CYP4X1Q8N118 509 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 OXNAD1Q96HP4 312 aaPredicted RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 GJD4Q96KN9 370 aaPredicted RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 MMTAG2Q9BU76 263 aaKnown RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 THAP2Q9H0W7 228 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 EBF3Q9H4W6 596 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 NRDE2Q9H7Z3 1164 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CYLDQ9NQC7 956 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 TRNAU1APQ9NX07 287 aaKnown RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 AP4S1Q9Y587 144 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 IVNS1ABPQ9Y6Y0 642 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 SFI1A8K8P3 1242 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 RAG1P15918 1043 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CACNB3P54284 484 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CDK16Q00536 496 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 PDK4Q16654 411 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CMPK2Q5EBM0 449 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 POTEAQ6S8J7 498 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 NLGN1Q8N2Q7 840 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CALML6Q8TD86 181 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 RSPH1Q8WYR4 309 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 SPOCK2Q92563 424 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 ZSWIM1Q9BR11 485 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 SEPT3Q9UH03 358 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 RSL24D1Q9UHA3 163 aaKnown RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 A0A0J9YVX5 310 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CHMP2AO43633 222 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 COPAP53621 1224 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 TTBK2Q6IQ55 1244 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 SCAIQ8N9R8 606 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 PHF12Q96QT6 1004 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 NAP1L4Q99733 375 aaKnown RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 MAK16Q9BXY0 300 aaKnown RBP12.91□□□□□ -0.34
LIG1-207ENST00000594759 ZC4H2Q9NQZ6 224 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 SH3GLB2Q9NR46 395 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 RABGEF1Q9UJ41 708 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 PRELID1Q9Y255 219 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 CNTNAP5Q8WYK1 1306 aa12.91□□□□□ -0.34
LIG1-207ENST00000594759 KLHL2O95198 593 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 PCP11498 1178 aaKnown RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 STMN1P16949 149 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 RASA1P20936 1047 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 ALDH1B1P30837 517 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 BASP1P80723 227 aaKnown RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 CDC16Q13042 620 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 PKN2Q16513 984 aaKnown RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 ZC2HC1CQ53FD0 456 aaPredicted RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 LPCAT4Q643R3 524 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 ASRGL1Q7L266 308 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 ZBED2Q9BTP6 218 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 TMEM109Q9BVC6 243 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 BRD8Q9H0E9 1235 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 LNPEPQ9UIQ6 1025 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 SOX13Q9UN79 622 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 RNF103-CHMP3A0A140T963 221 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 RPA3P35244 121 aaPredicted RBP12.9□□□□□ -0.34
LIG1-207ENST00000594759 TRPC1P48995 793 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 KLRC3Q07444 240 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 TROAPQ12815 778 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 GRAPQ13588 217 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 CEP55Q53EZ4 464 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 NAALADL2Q58DX5 795 aa12.9□□□□□ -0.34
LIG1-207ENST00000594759 INTS5Q6P9B9 1019 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms