RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SESTD1	Q86VW0	696 aa		16.43	■□□□□ 0.22
DDX39A-209	ENST00000589318	CELF4	Q9BZC1	486 aa	Known RBP	16.43	■□□□□ 0.22
DDX39A-209	ENST00000589318	NIF3L1	Q9GZT8	377 aa		16.43	■□□□□ 0.22
DDX39A-209	ENST00000589318	DDX20	Q9UHI6	824 aa	Known RBP	16.43	■□□□□ 0.22
DDX39A-209	ENST00000589318	CEP350	Q5VT06	3117 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	FAM170A	A1A519	330 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	SRRM3	A6NNA2	597 aa	Predicted RBP	16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	GNRH1	P01148	92 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	GZMA	P12544	262 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	YY1	P25490	414 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	ELF1	P32519	619 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	ASPA	P45381	313 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	ZNF132	P52740	706 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	TRPC3	Q13507	836 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	ZNF699	Q32M78	642 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	PREPL	Q4J6C6	727 aa	Predicted RBP	16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	SERINC5	Q86VE9	423 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	OTUD6B	Q8N6M0	293 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	LRRC57	Q8N9N7	239 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	ARHGEF26	Q96DR7	871 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	TLR10	Q9BXR5	811 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	THAP2	Q9H0W7	228 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	SNTG2	Q9NY99	539 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	MCM8	Q9UJA3	840 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	C2CD2	Q9Y426	696 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	PCDHB2	Q9Y5E7	798 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	SAR1B	Q9Y6B6	198 aa		16.42	■□□□□ 0.22
DDX39A-209	ENST00000589318	ANKRD62	A6NC57	917 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	GOLGA6B	A6NDN3	693 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318		H0YHG0	523 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	SRGAP2	O75044	1071 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	FTL	P02792	175 aa	Predicted RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	FNTA	P49354	379 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	MRPS6	P82932	125 aa	Known RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	UBXN11	Q5T124	520 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	TMEM270	Q6UE05	265 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	RAET1E	Q8TD07	263 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	SH3GL2	Q99962	352 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	PIN4	Q9Y237	131 aa	Known RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	HES2	Q9Y543	173 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	PCDHB4	Q9Y5E5	795 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	CCDC189	A1A4V9	331 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	RTN2	O75298	545 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	ITGB3	P05106	788 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	ABCB4	P21439	1286 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	GGCX	P38435	758 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	NAP1L1	P55209	391 aa	Known RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	TMEM132D	Q14C87	1099 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	FBXW10	Q5XX13	1052 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	FAM228A	Q86W67	206 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	RBBP8NL	Q8NC74	664 aa	Predicted RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	TPCN2	Q8NHX9	752 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	MAGEC3	Q8TD91	643 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	ZNF296	Q8WUU4	475 aa	Predicted RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	RFFL	Q8WZ73	363 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	SNX27	Q96L92	541 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	ZMAT2	Q96NC0	199 aa	Known RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	NXF3	Q9H4D5	531 aa	Known RBP	16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	PLEKHA4	Q9H4M7	779 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	SNX12	Q9UMY4	172 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	CDY2A	Q9Y6F7	541 aa		16.41	■□□□□ 0.22
DDX39A-209	ENST00000589318	NCK2	O43639	380 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	GUCY2F	P51841	1108 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	BPIFB4	P59827	614 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	CRYM	Q14894	314 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	FAM47C	Q5HY64	1035 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	WLS	Q5T9L3	541 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	ALKAL1	Q6UXT8	129 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	ZNF677	Q86XU0	584 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	NT5DC4	Q86YG4	428 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	CD302	Q8IX05	232 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	NOA1	Q8NC60	698 aa	Known RBP	16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	TAF4B	Q92750	862 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	MIEF2	Q96C03	454 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	VRTN	Q9H8Y1	702 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	PLEKHA5	Q9HAU0	1116 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	OSGEP	Q9NPF4	335 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	NOC2L	Q9Y3T9	749 aa	Known RBP	16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	CAPN7	Q9Y6W3	813 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	SCN1A	P35498	2009 aa		16.4	■□□□□ 0.22
DDX39A-209	ENST00000589318	FKTN	O75072	461 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	FTCD	O95954	541 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	CHRNA1	P02708	482 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	KRT19	P08727	400 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	UNG	P13051	313 aa	Predicted RBP	16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	MGAT3	Q09327	533 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	ZBTB6	Q15916	424 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	CLEC16A	Q2KHT3	1053 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	MEI1	Q5TIA1	1274 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	ALS2CL	Q60I27	953 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	SLFN11	Q7Z7L1	901 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	PCSK9	Q8NBP7	692 aa	Known RBP	16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	SLC35G2	Q8TBE7	412 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	BCO2	Q9BYV7	579 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	GOLPH3	Q9H4A6	298 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	CISH	Q9NSE2	258 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	POLI	Q9UNA4	740 aa		16.39	■□□□□ 0.21
DDX39A-209	ENST00000589318	TRPV2	Q9Y5S1	764 aa		16.39	■□□□□ 0.21

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms