RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	FMNL3	Q8IVF7	1028 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	RABGGTA	Q92696	567 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	NAP1L4	Q99733	375 aa	Known RBP	5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	BTBD2	Q9BX70	525 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	TMEM39B	Q9GZU3	492 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	SLK	Q9H2G2	1235 aa	Predicted RBP	5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	AGO3	Q9H9G7	860 aa	Known RBP	5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	ZBTB40	Q9NUA8	1239 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	RIC8B	Q9NVN3	520 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	DDX56	Q9NY93	547 aa	Known RBP	5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	HMG20B	Q9P0W2	317 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	TCEAL9	Q9UHQ7	104 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	PCDHAC2	Q9Y5I4	1007 aa		5.54	□□□□□ -1.52
ZNF540-204	ENST00000586792	MYH2	Q9UKX2	1941 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792		A0A1W2PRX2	142 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	IDH1	O75874	414 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	SOD2	P04179	222 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	ZBTB48	P10074	688 aa	Predicted RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	PTPN1	P18031	435 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	CALR	P27797	417 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	MCAM	P43121	646 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	BTD	P43251	543 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	LBX1	P52954	281 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	MECOM	Q03112	1051 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	TCP10	Q12799	353 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	MAP3K12	Q12852	859 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	TTF1	Q15361	905 aa	Predicted RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	COLEC12	Q5KU26	742 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	C20orf194	Q5TEA3	1177 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	OTUD7B	Q6GQQ9	843 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	NAA16	Q6N069	864 aa	Predicted RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	APOBEC3H	Q6NTF7	200 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	CDC42EP5	Q6NZY7	148 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792		Q6ZRM9	215 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	MOB2	Q70IA6	237 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	METTL16	Q86W50	562 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	IFNL3	Q8IZI9	196 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	FAM151A	Q8WW52	585 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	BBC3	Q96PG8	261 aa	Predicted RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	SENP7	Q9BQF6	1050 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	IER2	Q9BTL4	223 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	CD244	Q9BZW8	370 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	LRRCC1	Q9C099	1032 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	CCDC8	Q9H0W5	538 aa	Predicted RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	IL1RAPL2	Q9NP60	686 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	SAGE1	Q9NXZ1	904 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	DBNL	Q9UJU6	430 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	PRKAB1	Q9Y478	270 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	MRPL42	Q9Y6G3	142 aa	Known RBP	5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	OTOF	Q9HC10	1997 aa		5.53	□□□□□ -1.52
ZNF540-204	ENST00000586792	AK9	Q5TCS8	1911 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	AKAP11	Q9UKA4	1901 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	GAK	O14976	1311 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	SSC5D	A1L4H1	1573 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	MANSC4	A6NHS7	340 aa	Predicted RBP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	ENTPD3	O75355	529 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	DDAH1	O94760	285 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	GRIA2	P42262	883 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	RGS3	P49796	1198 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	PPP2R2A	P63151	447 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	LARP1B	Q659C4	914 aa	Known RBP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	TMEM200B	Q69YZ2	307 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	AMOTL1	Q8IY63	956 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	TEX11	Q8IYF3	940 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	LPP	Q93052	612 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	NSUN4	Q96CB9	384 aa	Known RBP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	EAF2	Q96CJ1	260 aa	Predicted RBP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	ACTR10	Q9NZ32	417 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	SWAP70	Q9UH65	585 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	FZD1	Q9UP38	647 aa		5.52	□□□□□ -1.53
ZNF540-204	ENST00000586792	AOX1	Q06278	1338 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	DLX3	O60479	287 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	HLA-DOA	P06340	250 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	HSPA8	P11142	646 aa	Known RBP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	ZNF37A	P17032	561 aa	Predicted RBP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	GPR85	P60893	370 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	VGLL4	Q14135	290 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	CCSAP	Q6IQ19	270 aa	Predicted RBP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	FAM43B	Q6ZT52	329 aa	Predicted RBP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	EP400NL	Q6ZTU2	488 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	GAREM2	Q75VX8	874 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	MIGA2	Q7L4E1	593 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	C11orf96	Q7Z7L8	435 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	VRK3	Q8IV63	474 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	OPTN	Q96CV9	577 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	CLMN	Q96JQ2	1002 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	IDI2	Q9BXS1	227 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	ACBD3	Q9H3P7	528 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	TOR3A	Q9H497	397 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	TYW1	Q9NV66	732 aa	Known RBP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	AATF	Q9NY61	560 aa	Known RBP eCLIP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	INPP5F	Q9Y2H2	1132 aa		5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	5.51	□□□□□ -1.53
ZNF540-204	ENST00000586792	GPR75-ASB3	A0A0A6YYF3	556 aa		5.5	□□□□□ -1.53
ZNF540-204	ENST00000586792	CCL15-CCL14	A0A0B4J2E2	113 aa		5.5	□□□□□ -1.53
ZNF540-204	ENST00000586792	FAM90A27P	A6NNH2	459 aa		5.5	□□□□□ -1.53
ZNF540-204	ENST00000586792	GOLIM4	O00461	696 aa		5.5	□□□□□ -1.53

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms