RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GAREM2Q75VX8 874 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 RALYLQ86SE5 291 aaKnown RBP17.92■□□□□ 0.46
VPS53-218ENST00000575207 NCOA7Q8NI08 942 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 TBC1D32Q96NH3 1257 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 CXCL16Q9H2A7 254 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 KCNK4Q9NYG8 393 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 ZBTB47Q9UFB7 747 aaPredicted RBP17.92■□□□□ 0.46
VPS53-218ENST00000575207 FBXL5Q9UKA1 691 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 MYO16Q9Y6X6 1858 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 I3L4J1 428 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 RHDQ02161 417 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 MBTD1Q05BQ5 628 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 POU5F1BQ06416 359 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 SMAD1Q15797 465 aaKnown RBP17.91■□□□□ 0.46
VPS53-218ENST00000575207 CRY1Q16526 586 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 MAP7D1Q3KQU3 841 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 B3GNT9Q6UX72 402 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 MIER3Q7Z3K6 550 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 CDR2LQ86X02 465 aaPredicted RBP17.91■□□□□ 0.46
VPS53-218ENST00000575207 BAHD1Q8TBE0 780 aaPredicted RBP17.91■□□□□ 0.46
VPS53-218ENST00000575207 SLC5A5Q92911 643 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 TEKT3Q9BXF9 490 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 DNAJC25Q9H1X3 360 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 PPME1Q9Y570 386 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 PLXND1Q9Y4D7 1925 aa17.91■□□□□ 0.46
VPS53-218ENST00000575207 FAM149AA5PLN7 773 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 CYP21A2P08686 494 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 ATXN1LP0C7T5 689 aaKnown RBP17.9■□□□□ 0.46
VPS53-218ENST00000575207 GP1BBP13224 206 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 RXRAP19793 462 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 U2AF2P26368 475 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS53-218ENST00000575207 GJA4P35212 333 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 BRCC3P46736 316 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 CLCNKBP51801 687 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 NPEPPSP55786 919 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 PSMD2Q13200 908 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 UPP1Q16831 310 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 GPR158Q5T848 1215 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 TRIM68Q6AZZ1 485 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 ZNF579Q8NAF0 562 aaKnown RBP17.9■□□□□ 0.46
VPS53-218ENST00000575207 C3orf58Q8NDZ4 430 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 USP33Q8TEY7 942 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 TCP11Q8WWU5 503 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 DIAPH3Q9NSV4 1193 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 ANKMY1Q9P2S6 941 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 YIPF1Q9Y548 306 aa17.9■□□□□ 0.46
VPS53-218ENST00000575207 ENO4A6NNW6 628 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 H7C4K7 107 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 hCG_1984214I3L0E3 225 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 B4GALT5O43286 388 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 AP5Z1O43299 807 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 ALDH1A2O94788 518 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 RFC5P40937 340 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 BYSLQ13895 437 aaKnown RBP17.89■□□□□ 0.45
VPS53-218ENST00000575207 LRCH2Q5VUJ6 765 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 ZNF713Q8N859 430 aaPredicted RBP17.89■□□□□ 0.45
VPS53-218ENST00000575207 WHAMMQ8TF30 809 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 CD101Q93033 1021 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 NXPE2Q96DL1 559 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 ATXN3LQ9H3M9 355 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 TASP1Q9H6P5 420 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 BARHL2Q9NY43 387 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 MMP17Q9ULZ9 603 aa17.89■□□□□ 0.45
VPS53-218ENST00000575207 U3KPZ7 1027 aaPredicted RBP17.89■□□□□ 0.45
VPS53-218ENST00000575207 HELZP42694 1942 aaKnown RBP17.88■□□□□ 0.45
VPS53-218ENST00000575207 SYN3O14994 580 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 PSMD10O75832 226 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 CCR10P46092 362 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 PSMC5P62195 406 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 CXADRP78310 365 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 TLE3Q04726 772 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 PKDCCQ504Y2 493 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 ARHGAP15Q53QZ3 475 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 BEST2Q8NFU1 509 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 SNIP1Q8TAD8 396 aaKnown RBP17.88■□□□□ 0.45
VPS53-218ENST00000575207 BAP1Q92560 729 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 ARID3AQ99856 593 aa17.88■□□□□ 0.45
VPS53-218ENST00000575207 C2CD3Q4AC94 2353 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 A0A1W2PQD8 194 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 E7EWF7 191 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 FGF19O95750 216 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 HNRNPLP14866 589 aaKnown RBP eCLIP17.87■□□□□ 0.45
VPS53-218ENST00000575207 ARSAP15289 507 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 ZNF33AQ06730 810 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 PLD1Q13393 1074 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 MXD4Q14582 209 aaPredicted RBP17.87■□□□□ 0.45
VPS53-218ENST00000575207 TMEM92Q6UXU6 159 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 MB21D2Q8IYB1 491 aaPredicted RBP17.87■□□□□ 0.45
VPS53-218ENST00000575207 TMTC2Q8N394 836 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 ZNF513Q8N8E2 541 aaPredicted RBP17.87■□□□□ 0.45
VPS53-218ENST00000575207 CEP170P1Q96L14 293 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 UROC1Q96N76 676 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 MTA3Q9BTC8 594 aa17.87■□□□□ 0.45
VPS53-218ENST00000575207 CIZ1Q9ULV3 898 aaPredicted RBP17.87■□□□□ 0.45
VPS53-218ENST00000575207 PLK4O00444 970 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 TBX3O15119 743 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 RECQL4O94761 1208 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 EPHB3P54753 998 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 LY6DQ14210 128 aa17.86■□□□□ 0.45
VPS53-218ENST00000575207 C2orf27AQ580R0 203 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms