RNA–Protein interactions for RNA: ENST00000574322.5

CTDNEP1-210, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-210ENST00000574322 RPLP2P05387 115 aaKnown RBP30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 WEE2P0C1S8 567 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 RHOXF2BP0C7M4 288 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 C2orf54Q08AI8 447 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 WDR72Q3MJ13 1102 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 NAA35Q5VZE5 725 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 CXCL17Q6UXB2 119 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 KLHDC9Q8NEP7 349 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 RHOXF2Q9BQY4 288 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 CELF4Q9BZC1 486 aaKnown RBP30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 PDCL3Q9H2J4 239 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 TTC7AQ9ULT0 858 aaPredicted RBP30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 PCDHGC3Q9UN70 934 aa30.31■■■□□ 2.44
CTDNEP1-210ENST00000574322 P4HA1P13674 534 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 RPAINQ86UA6 219 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 HNRNPLLQ8WVV9 542 aaKnown RBP30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 CPA5Q8WXQ8 436 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 SNTG2Q9NY99 539 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 EHD2Q9NZN4 543 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 TMEM59LQ9UK28 342 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 POLIQ9UNA4 740 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 CFHP08603 1231 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 CD58P19256 250 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 YARSP54577 528 aaKnown RBP30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 CCSAPQ6IQ19 270 aaPredicted RBP30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 USP38Q8NB14 1042 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 RUBCNQ92622 972 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 KIF12Q96FN5 646 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 TMEM106CQ9BVX2 250 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 ZNF518BQ9C0D4 1074 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 CNTN3Q9P232 1028 aa30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 NXF1Q9UBU9 619 aaKnown RBP30.3■■■□□ 2.44
CTDNEP1-210ENST00000574322 ATMINO43313 823 aaPredicted RBP30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 PAEPP09466 180 aa30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 POLR2BP30876 1174 aaKnown RBP30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 CDH5P33151 784 aaPredicted RBP30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 DNA2P51530 1060 aa30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 C1QBPQ07021 282 aaKnown RBP30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 HPDLQ96IR7 371 aa30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 CARD9Q9H257 536 aa30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 SMARCAL1Q9NZC9 954 aa30.29■■■□□ 2.44
CTDNEP1-210ENST00000574322 MRPS6P82932 125 aaKnown RBP30.28■■■□□ 2.44
CTDNEP1-210ENST00000574322 XKR4Q5GH76 650 aa30.28■■■□□ 2.44
CTDNEP1-210ENST00000574322 UBXN11Q5T124 520 aa30.28■■■□□ 2.44
CTDNEP1-210ENST00000574322 TTC39CQ8N584 583 aa30.28■■■□□ 2.44
CTDNEP1-210ENST00000574322 AGAP1Q9UPQ3 857 aa30.28■■■□□ 2.44
CTDNEP1-210ENST00000574322 PIN4Q9Y237 131 aaKnown RBP30.28■■■□□ 2.44
CTDNEP1-210ENST00000574322 MCM3P25205 808 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 PTP4A2Q12974 167 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 GLE1Q53GS7 698 aaKnown RBP30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 CCDC70Q6NSX1 233 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 TMCO3Q6UWJ1 677 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 SCARA5Q6ZMJ2 495 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 RNF180Q86T96 592 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 SERINC5Q86VE9 423 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 ZSWIM1Q9BR11 485 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 SDCBP2Q9H190 292 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 ZNF446Q9NWS9 450 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 TRIP11Q15643 1979 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 BRCA2P51587 3418 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 ZRANB2O95218 330 aaKnown RBP eCLIP30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 LIN9Q5TKA1 542 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 GDF6Q6KF10 455 aaPredicted RBP30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 CC2D1AQ6P1N0 951 aaPredicted RBP30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 RSPH3Q86UC2 560 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 CD101Q93033 1021 aa30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.27■■■□□ 2.442e-6■■■□□ 15.1
CTDNEP1-210ENST00000574322 TRIM6Q9C030 488 aaPredicted RBP30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 RBM12Q9NTZ6 932 aaKnown RBP30.27■■■□□ 2.44
CTDNEP1-210ENST00000574322 PDCD11Q14690 1871 aaKnown RBP30.26■■■□□ 2.44
CTDNEP1-210ENST00000574322 FAM170AA1A519 330 aa30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 CEP104O60308 925 aa30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 ARRDC4Q8NCT1 418 aa30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 ZMAT2Q96NC0 199 aaKnown RBP30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 WNT8AQ9H1J5 351 aa30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 NXF3Q9H4D5 531 aaKnown RBP30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 ADAM22Q9P0K1 906 aa30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 TRPV2Q9Y5S1 764 aa30.26■■■□□ 2.43
CTDNEP1-210ENST00000574322 PGRMC1O00264 195 aaKnown RBP30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 CILPO75339 1184 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 MMP8P22894 467 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 RRM1P23921 792 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 RAD23BP54727 409 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 WHAMMQ8TF30 809 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 TFAP2BQ92481 460 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 CHORDC1Q9UHD1 332 aaPredicted RBP30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 OGDHLQ9ULD0 1010 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 RECQL4O94761 1208 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 ASGR1P07306 291 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 COMTP21964 271 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 BRD2P25440 801 aaKnown RBP30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 VSNL1P62760 191 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 INCA1Q0VD86 236 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 MESDQ14696 234 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 PTPROQ16827 1216 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 PLEKHA7Q6IQ23 1121 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 FAM228AQ86W67 206 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 TMEM35BQ8NCS4 154 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 LHX5Q9H2C1 402 aa30.25■■■□□ 2.43
CTDNEP1-210ENST00000574322 SMYD3Q9H7B4 428 aa30.25■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms