RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CDX4O14627 284 aaPredicted RBP12.12□□□□□ -0.47
VPS53-207ENST00000570510 MAP3K13O43283 966 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 LYPLA2O95372 231 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 XBP1P17861 261 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 DRD1P21728 446 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 RPL9P32969 192 aaKnown RBP12.12□□□□□ -0.47
VPS53-207ENST00000570510 OSTNP61366 133 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 IRX4P78413 519 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 PPP2R5AQ15172 486 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 FBXO43Q4G163 708 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 ATF7IP2Q5U623 682 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 CDCA2Q69YH5 1023 aaPredicted RBP12.12□□□□□ -0.47
VPS53-207ENST00000570510 FSTL4Q6MZW2 842 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 CD300LGQ6UXG3 332 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 ITIH5Q86UX2 942 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 PROSER1Q86XN7 944 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 HDDC3Q8N4P3 179 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 TSTD1Q8NFU3 115 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 RPLP0P6Q8NHW5 317 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 NACC1Q96RE7 527 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 GKN1Q9NS71 199 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 POLR3BQ9NW08 1133 aaPredicted RBP12.12□□□□□ -0.47
VPS53-207ENST00000570510 ASB3Q9Y575 518 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 WDFY3Q8IZQ1 3526 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 LAMA1P25391 3075 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 COL4A2P08572 1712 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 A0A087WWV3 80 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 TRDMT1O14717 391 aaKnown RBP12.11□□□□□ -0.47
VPS53-207ENST00000570510 EGFP01133 1207 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 GABRR2P28476 465 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 EFNA5P52803 228 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 YWHAHQ04917 246 aaPredicted RBP12.11□□□□□ -0.47
VPS53-207ENST00000570510 BFSP1Q12934 665 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 DUSP4Q13115 394 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 RUNX3Q13761 415 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 MRPL58Q14197 206 aaKnown RBP12.11□□□□□ -0.47
VPS53-207ENST00000570510 DMC1Q14565 340 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 COL28A1Q2UY09 1125 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 TRIM61Q5EBN2 209 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 EEF1DP3Q658K8 133 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 PIK3AP1Q6ZUJ8 805 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 SYT13Q7L8C5 426 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 TTC30AQ86WT1 665 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 FAM177A1Q8N128 213 aaPredicted RBP12.11□□□□□ -0.47
VPS53-207ENST00000570510 CCDC26Q8TAB7 109 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 DDX12PQ92771 950 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 SUSD3Q96L08 255 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 IFT74Q96LB3 600 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 LRRC3BQ96PB8 259 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 HSD17B14Q9BPX1 270 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 OXCT2Q9BYC2 517 aaPredicted RBP12.11□□□□□ -0.47
VPS53-207ENST00000570510 EBF1Q9UH73 591 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 GPSM3Q9Y4H4 160 aa12.11□□□□□ -0.47
VPS53-207ENST00000570510 PDCD11Q14690 1871 aaKnown RBP12.1□□□□□ -0.47
VPS53-207ENST00000570510 NID2Q14112 1375 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 NBEAQ8NFP9 2946 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 M0R2N6 131 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 XRCC6P12956 609 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS53-207ENST00000570510 AVPR1AP37288 418 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 CACNB1Q02641 598 aaPredicted RBP12.1□□□□□ -0.47
VPS53-207ENST00000570510 SOX4Q06945 474 aaPredicted RBP12.1□□□□□ -0.47
VPS53-207ENST00000570510 VEPH1Q14D04 833 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 PMS2CLQ68D20 193 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 DNAJB7Q7Z6W7 309 aaPredicted RBP12.1□□□□□ -0.47
VPS53-207ENST00000570510 CHCHD4Q8N4Q1 142 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 TTC16Q8NEE8 873 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 TBC1D32Q96NH3 1257 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 P2RY13Q9BPV8 354 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 TCHPQ9BT92 498 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 TPSD1Q9BZJ3 242 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 TM6SF1Q9BZW5 370 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 EBF3Q9H4W6 596 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 TASP1Q9H6P5 420 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 KCNJ14Q9UNX9 436 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 SLC27A5Q9Y2P5 690 aa12.1□□□□□ -0.47
VPS53-207ENST00000570510 GCN1Q92616 2671 aaKnown RBP12.1□□□□□ -0.47
VPS53-207ENST00000570510 DMXL2Q8TDJ6 3036 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 K7ERI5 159 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 MEFVO15553 781 aaPredicted RBP12.09□□□□□ -0.47
VPS53-207ENST00000570510 PRAMEF12O95522 483 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 PDIA3P30101 505 aaKnown RBP12.09□□□□□ -0.47
VPS53-207ENST00000570510 CDC25CP30307 473 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 NAMPTP43490 491 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 GALK1P51570 392 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 ANAPC15P60006 121 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 CALCRLQ16602 461 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 ZNF568Q3ZCX4 644 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 ARMCX5Q6P1M9 558 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 GAREM2Q75VX8 874 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 LPCAT2Q7L5N7 544 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 TMC8Q8IU68 726 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 HNRNPLLQ8WVV9 542 aaKnown RBP12.09□□□□□ -0.47
VPS53-207ENST00000570510 PSMG2Q969U7 264 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 ACAP3Q96P50 834 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 AGXT2Q9BYV1 514 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 SMG9Q9H0W8 520 aaKnown RBP12.09□□□□□ -0.47
VPS53-207ENST00000570510 CCDC86Q9H6F5 360 aaKnown RBP12.09□□□□□ -0.47
VPS53-207ENST00000570510 TTC12Q9H892 705 aaPredicted RBP12.09□□□□□ -0.47
VPS53-207ENST00000570510 PCDHB8Q9UN66 801 aa12.09□□□□□ -0.47
VPS53-207ENST00000570510 FLNBO75369 2602 aaKnown RBP12.08□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms