RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 KCNG1Q9UIX4 513 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CPSF3Q9UKF6 684 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 PNMA3Q9UL41 463 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 MGAMO43451 1857 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ASB14A6NK59 587 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 KIAA0391O15091 583 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 GRAP2O75791 330 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ERLIN2O94905 339 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ACSL3O95573 720 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ECEL1O95672 775 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 GH1P01241 217 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 KRT1P04264 644 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 NR1D1P20393 614 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 POLR2BP30876 1174 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 CCT5P48643 541 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CENPCQ03188 943 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ADCY2Q08462 1091 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ADCY1Q08828 1119 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CCDC38Q502W7 563 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 SESTD1Q86VW0 696 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 OR6J1Q8NGC5 347 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 SH3GL2Q99962 352 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 PPANQ9NQ55 473 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 SAE1Q9UBE0 346 aaPredicted RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 TTC7AQ9ULT0 858 aaPredicted RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 DOCK3Q8IZD9 2030 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 KAT6AQ92794 2004 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 GLTPD2A6NH11 291 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 FOXO6A8MYZ6 492 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 H3BRB1 525 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ACKR2O00590 384 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 DYNC1LI2O43237 492 aaPredicted RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 ADCY6O43306 1168 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 LGR5O75473 907 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CYP1A1P04798 512 aaPredicted RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 CHRNA3P32297 505 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 PTGIRP43119 386 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 SEC24CP53992 1094 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CLDN10P78369 228 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 MCL1Q07820 350 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 DUPD1Q68J44 220 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 TAPT1Q6NXT6 567 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 PLPPR4Q7Z2D5 763 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 PLCD3Q8N3E9 789 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 BCAS4Q8TDM0 211 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 TWNKQ96RR1 684 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 C2orf40Q9H1Z8 148 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 SEMA4AQ9H3S1 761 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 TUT1Q9H6E5 874 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 IFT122Q9HBG6 1241 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 PCSK1NQ9UHG2 260 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ARF4P18085 180 aaPredicted RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 ASPAP45381 313 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 PHKA2P46019 1235 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 IRAK1P51617 712 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 CCNA1P78396 465 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 PLCB3Q01970 1234 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 ZNF667Q5HYK9 610 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 CDCA2Q69YH5 1023 aaPredicted RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 ZDHHC24Q6UX98 284 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 GPR142Q7Z601 462 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 ERICH1Q86X53 443 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 C1orf127Q8N9H9 656 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 MRRFQ96E11 262 aaKnown RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 ATP6V1G3Q96LB4 118 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 SELENOSQ9BQE4 189 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 DDX23Q9BUQ8 820 aaKnown RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 SDCBP2Q9H190 292 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 AGAP1Q9UPQ3 857 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 DIS3Q9Y2L1 958 aaKnown RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.53□□□□□ -0.72
VPS53-206ENST00000570359 ATP8B3O60423 1300 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 LRRD1A4D1F6 860 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 ABLIM1O14639 778 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 PROSCO94903 275 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 SMPD1P17405 629 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 ADCY8P40145 1251 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 PMS2P54278 862 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 HADHBP55084 474 aaKnown RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 MAGOHP61326 146 aaKnown RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 OGDHQ02218 1023 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 CALCOCO2Q13137 446 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 SLC29A2Q14542 456 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 SGSM1Q2NKQ1 1148 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 SYCP2LQ5T4T6 812 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 KCNV1Q6PIU1 500 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 MSL3Q8N5Y2 521 aaKnown RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 LPIN3Q9BQK8 851 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 ADAM33Q9BZ11 813 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 GRHL1Q9NZI5 618 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 FEZ2Q9UHY8 353 aaPredicted RBP10.53□□□□□ -0.72
VPS53-206ENST00000570359 LCMT1Q9UIC8 334 aa10.53□□□□□ -0.72
VPS53-206ENST00000570359 LOC285556D6RIA3 1793 aa10.52□□□□□ -0.72
VPS53-206ENST00000570359 A0A0G2JMZ2 1700 aa10.52□□□□□ -0.72
VPS53-206ENST00000570359 PASKQ96RG2 1323 aa10.52□□□□□ -0.72
VPS53-206ENST00000570359 M0QYV0 167 aa10.52□□□□□ -0.73
VPS53-206ENST00000570359 SNAI1O95863 264 aaPredicted RBP10.52□□□□□ -0.73
VPS53-206ENST00000570359 ZSCAN5DPP0CG00 497 aa10.52□□□□□ -0.73
VPS53-206ENST00000570359 ETS1P14921 441 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms