RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 TNMDQ9H2S6 317 aa13.05□□□□□ -0.32
VPS9D1-207ENST00000568691 GOLPH3LQ9H4A5 285 aa13.05□□□□□ -0.32
VPS9D1-207ENST00000568691 FAM13BQ9NYF5 915 aa13.05□□□□□ -0.32
VPS9D1-207ENST00000568691 PARP2Q9UGN5 583 aa13.05□□□□□ -0.32
VPS9D1-207ENST00000568691 VAV3Q9UKW4 847 aa13.05□□□□□ -0.32
VPS9D1-207ENST00000568691 NEUROG3Q9Y4Z2 214 aa13.05□□□□□ -0.32
VPS9D1-207ENST00000568691 MYH11P35749 1972 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 CYP3A7-CYP3A51PA0A087WV96 503 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 CCDC163A0A0D9SF12 145 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 BCLAF3A2AJT9 711 aaKnown RBP13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 INO80B-WBP1J3KQ70 363 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 CAVIN2O95810 425 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 PFKFB1P16118 471 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 CYP3A7P24462 503 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 LONP1P36776 959 aaKnown RBP13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 RFC5P40937 340 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 USP11P51784 963 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 EPHA5P54756 1037 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 INF2Q27J81 1249 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 DGKKQ5KSL6 1271 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 PPP4R3AQ6IN85 833 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 SLC8B1Q6J4K2 584 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 SHC4Q6S5L8 630 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 PROSER1Q86XN7 944 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 DEFB124Q8NES8 71 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 SHKBP1Q8TBC3 707 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 CCDC34Q96HJ3 373 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 ZFYVE19Q96K21 471 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 MKNK1Q9BUB5 465 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 LRRC3Q9BY71 257 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 GTSE1Q9NYZ3 720 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 USP25Q9UHP3 1055 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 MSRB2Q9Y3D2 182 aa13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 ASCC3Q8N3C0 2202 aaKnown RBP13.04□□□□□ -0.32
VPS9D1-207ENST00000568691 PATE3B3GLJ2 98 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 CHADO15335 359 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 ASAP2O43150 1006 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 NEMFO60524 1076 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 CCDC192P0DO97 292 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 SYKP43405 635 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 BRCC3P46736 316 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 QARSP47897 775 aaKnown RBP13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 NDUFA8P51970 172 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 PCBP1Q15365 356 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 TEAD2Q15562 447 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 STXBP5Q5T5C0 1151 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 PDXDC1Q6P996 788 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 SLC27A1Q6PCB7 646 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 TCEAL8Q8IYN2 117 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 ZNF461Q8TAF7 563 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 TBCKQ8TEA7 893 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 MSANTD3Q96H12 275 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 AK8Q96MA6 479 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 TRIM6Q9C030 488 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 TSPY26PQ9H489 355 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 C8orf33Q9H7E9 229 aaPredicted RBP13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 HOOK1Q9UJC3 728 aaKnown RBP13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 USP20Q9Y2K6 914 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 INSL5Q9Y5Q6 135 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 PDCD11Q14690 1871 aaKnown RBP13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 NAV2Q8IVL1 2488 aa13.03□□□□□ -0.32
VPS9D1-207ENST00000568691 A0A1B0GVL5 298 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 TMEM189-UBE2V1I3L0A0 370 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 WNT7AO00755 349 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 SLC37A4O43826 429 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 AKAP3O75969 853 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 LRG1P02750 347 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 EDN1P05305 212 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 ATF2P15336 505 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 GLRA2P23416 452 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 MCM7P33993 719 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 TXLNAP40222 546 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 KPNA1P52294 538 aaPredicted RBP13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 CACNB1Q02641 598 aaPredicted RBP13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 POU5F1BQ06416 359 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 TNK2Q07912 1038 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 ELAVL2Q12926 359 aaKnown RBP13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 COL28A1Q2UY09 1125 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 PDZD4Q76G19 769 aaPredicted RBP13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 RALGPS2Q86X27 583 aaPredicted RBP13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 C4orf32Q8N8J7 132 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 ADAM32Q8TC27 787 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 FUCA2Q9BTY2 467 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 CACNA2D2Q9NY47 1150 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 RGL1Q9NZL6 768 aa13.02□□□□□ -0.33
VPS9D1-207ENST00000568691 PCNX2A6NKB5 2137 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 FAM221BA6H8Z2 402 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 ZNF197O14709 1029 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 RECQL4O94761 1208 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 ZNF202O95125 648 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 VNN2O95498 520 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 PRKCBP05771 671 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 THP07101 528 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 OR52Z1P0C646 297 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 ATP2B1P20020 1258 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 ARL2P36404 184 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 CLCNKBP51801 687 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 CREB5Q02930 508 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 PPP2R5CQ13362 524 aa13.01□□□□□ -0.33
VPS9D1-207ENST00000568691 ZNF174Q15697 407 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms