RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TYMPP19971 482 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 KCNA5P22460 613 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 PNPLA4P41247 253 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 NDUFV1P49821 464 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 CDR1P51861 262 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 NCOA4Q13772 614 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 SOWAHAQ2M3V2 549 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 CCDC40Q4G0X9 1142 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 CTXN3Q4LDR2 81 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 CBWD6Q4V339 395 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 DCAF17Q5H9S7 520 aaPredicted RBP21.03■□□□□ 0.96
CLN3-225ENST00000566824 CBWD3Q5JTY5 395 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 CBWD5Q5RIA9 395 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 LILRA6Q6PI73 481 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 OSTM1Q86WC4 334 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 APPL2Q8NEU8 664 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 TAS1R2Q8TE23 839 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 HLA-CQ95604 372 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 SLC35C1Q96A29 364 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-225ENST00000566824 GDAP2Q9NXN4 497 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 POLIQ9UNA4 740 aa21.03■□□□□ 0.96
CLN3-225ENST00000566824 TGM5O43548 720 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 HLA-DRAP01903 254 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 ADH1AP07327 375 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 OR4Q2P0C623 313 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 ERCC5P28715 1186 aaPredicted RBP21.02■□□□□ 0.95
CLN3-225ENST00000566824 AP3M2P53677 418 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 ARPP19P56211 112 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 TYRO3Q06418 890 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 ENPEPQ07075 957 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 TRPC3Q13507 836 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 TCERG1LQ5VWI1 586 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 OVOS1Q6IE37 1185 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 SPOPLQ6IQ16 392 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 SASS6Q6UVJ0 657 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 TMEM184AQ6ZMB5 413 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 LIMS2Q7Z4I7 341 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 FRMD5Q7Z6J6 570 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 PDCL2Q8N4E4 241 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 C12orf76Q8N812 135 aaPredicted RBP21.02■□□□□ 0.95
CLN3-225ENST00000566824 OR10T2Q8NGX3 314 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 SEMA4DQ92854 862 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 PI4K2AQ9BTU6 479 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 APOL5Q9BWW9 433 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 CDH22Q9UJ99 828 aa21.02■□□□□ 0.95
CLN3-225ENST00000566824 YWHAHQ04917 246 aaPredicted RBP21.01■□□□□ 0.95
CLN3-225ENST00000566824 MYO1EQ12965 1108 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 NFKBIBQ15653 356 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 HSP90AA4PQ58FG1 418 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 SLC8B1Q6J4K2 584 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 SYCE2Q6PIF2 218 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 TRIM59Q8IWR1 403 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 KBTBD7Q8WVZ9 684 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 MSLNLQ96KJ4 702 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 DNAJC25Q9H1X3 360 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 TMEM8AQ9HCN3 771 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 NME7Q9Y5B8 376 aa21.01■□□□□ 0.95
CLN3-225ENST00000566824 DOCK6Q96HP0 2047 aa21■□□□□ 0.95
CLN3-225ENST00000566824 C2orf16Q68DN1 1984 aa21■□□□□ 0.95
CLN3-225ENST00000566824 WDR27A2RRH5 827 aa21■□□□□ 0.95
CLN3-225ENST00000566824 H7C4K7 107 aa21■□□□□ 0.95
CLN3-225ENST00000566824 NCK2O43639 380 aa21■□□□□ 0.95
CLN3-225ENST00000566824 VNN2O95498 520 aa21■□□□□ 0.95
CLN3-225ENST00000566824 PAX3P23760 479 aa21■□□□□ 0.95
CLN3-225ENST00000566824 ROR1Q01973 937 aa21■□□□□ 0.95
CLN3-225ENST00000566824 CREMQ03060 361 aa21■□□□□ 0.95
CLN3-225ENST00000566824 RAB33AQ14088 237 aa21■□□□□ 0.95
CLN3-225ENST00000566824 STX1AQ16623 288 aa21■□□□□ 0.95
CLN3-225ENST00000566824 CCDC142Q17RM4 750 aa21■□□□□ 0.95
CLN3-225ENST00000566824 WDR72Q3MJ13 1102 aa21■□□□□ 0.95
CLN3-225ENST00000566824 ZNF280DQ6N043 979 aa21■□□□□ 0.95
CLN3-225ENST00000566824 ANKRD54Q6NXT1 300 aa21■□□□□ 0.95
CLN3-225ENST00000566824 PDXDC1Q6P996 788 aa21■□□□□ 0.95
CLN3-225ENST00000566824 USP37Q86T82 979 aa21■□□□□ 0.95
CLN3-225ENST00000566824 APOBEC3GQ9HC16 384 aaKnown RBP21■□□□□ 0.95
CLN3-225ENST00000566824 NXF1Q9UBU9 619 aaKnown RBP21■□□□□ 0.95
CLN3-225ENST00000566824 HUS1O60921 280 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 STAU1O95793 577 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 GLUD1P00367 558 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 GTF2H1P32780 548 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 PIK3CAP42336 1068 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 MARSP56192 900 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 ZNF699Q32M78 642 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 PPFIBP1Q86W92 1011 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 CNOT6LQ96LI5 555 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 MRPL45Q9BRJ2 306 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 FUCA2Q9BTY2 467 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 SDCBP2Q9H190 292 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 SMYD3Q9H7B4 428 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 METTL14Q9HCE5 456 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 MAN1C1Q9NR34 630 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 SAMSN1Q9NSI8 373 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 ANO10Q9NW15 660 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 DACH1Q9UI36 760 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 COG5Q9UP83 839 aa20.99■□□□□ 0.95
CLN3-225ENST00000566824 R3HCC1Q9Y3T6 440 aaKnown RBP20.99■□□□□ 0.95
CLN3-225ENST00000566824 TCF20Q9UGU0 1960 aaKnown RBP20.98■□□□□ 0.95
CLN3-225ENST00000566824 SYCE3A1L190 88 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms