RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 RRM1P23921 792 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 DNA2P51530 1060 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 GUCY2FP51841 1108 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 INCA1Q0VD86 236 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 USP38Q8NB14 1042 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 BEST2Q8NFU1 509 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 CD99L2Q8TCZ2 262 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 WHAMMQ8TF30 809 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 HNRNPLLQ8WVV9 542 aaKnown RBP13.75□□□□□ -0.21
SNX1-211ENST00000560829 CD101Q93033 1021 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 PNKPQ96T60 521 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 SENP6Q9GZR1 1112 aaPredicted RBP13.75□□□□□ -0.21
SNX1-211ENST00000560829 SMYD3Q9H7B4 428 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 SMARCAL1Q9NZC9 954 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 DDX20Q9UHI6 824 aaKnown RBP13.75□□□□□ -0.21
SNX1-211ENST00000560829 UBQLN1Q9UMX0 589 aaKnown RBP13.75□□□□□ -0.21
SNX1-211ENST00000560829 NOC2LQ9Y3T9 749 aaKnown RBP13.75□□□□□ -0.21
SNX1-211ENST00000560829 HES2Q9Y543 173 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 CDY2AQ9Y6F7 541 aa13.75□□□□□ -0.21
SNX1-211ENST00000560829 FAM170AA1A519 330 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 RHOXF2BP0C7M4 288 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 MMP8P22894 467 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 RAD23BP54727 409 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 MGAT3Q09327 533 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 ZNF394Q53GI3 561 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 LIN9Q5TKA1 542 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 PLEKHA7Q6IQ23 1121 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 PASD1Q8IV76 773 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 TMEM130Q8N3G9 435 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 TMEM35BQ8NCS4 154 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 TFAP2BQ92481 460 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 RUBCNQ92622 972 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 RHOXF2Q9BQY4 288 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.74□□□□□ -0.213e-7■■□□□ 11.8
SNX1-211ENST00000560829 CXCL16Q9H2A7 254 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 LHX5Q9H2C1 402 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 ADAM22Q9P0K1 906 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 CHORDC1Q9UHD1 332 aaPredicted RBP13.74□□□□□ -0.21
SNX1-211ENST00000560829 GRIN2DO15399 1336 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 PGRMC1O00264 195 aaKnown RBP13.74□□□□□ -0.21
SNX1-211ENST00000560829 MED7O43513 233 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 CABYRO75952 493 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 COMTP21964 271 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 MCM3P25205 808 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 BRD2P25440 801 aaKnown RBP13.74□□□□□ -0.21
SNX1-211ENST00000560829 RAP1GAPP47736 663 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 CDH8P55286 799 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 MYO1EQ12965 1108 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 GLE1Q53GS7 698 aaKnown RBP13.74□□□□□ -0.21
SNX1-211ENST00000560829 SMG8Q8ND04 991 aaKnown RBP13.74□□□□□ -0.21
SNX1-211ENST00000560829 WNT8BQ93098 351 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 C11orf70Q9BRQ4 267 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 WNT8AQ9H1J5 351 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 CHST12Q9NRB3 414 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 RBM12Q9NTZ6 932 aaKnown RBP13.74□□□□□ -0.21
SNX1-211ENST00000560829 IPPQ9Y573 584 aa13.74□□□□□ -0.21
SNX1-211ENST00000560829 CEP104O60308 925 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 CYP3A5P20815 502 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 CTNNA2P26232 953 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 TNNC1P63316 161 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 PTPN11Q06124 597 aaPredicted RBP13.73□□□□□ -0.21
SNX1-211ENST00000560829 MESDQ14696 234 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 CLUL1Q15846 466 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 PTPROQ16827 1216 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 FAM47CQ5HY64 1035 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 DCAF12L1Q5VU92 463 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 CCDC70Q6NSX1 233 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 TMCO3Q6UWJ1 677 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 RNF180Q86T96 592 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 SLC4A11Q8NBS3 891 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 TMEM176AQ96HP8 235 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 TWNKQ96RR1 684 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 MRPL47Q9HD33 250 aaKnown RBP13.73□□□□□ -0.21
SNX1-211ENST00000560829 ZNF446Q9NWS9 450 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 TUBGCP4Q9UGJ1 667 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 BARX2Q9UMQ3 279 aaPredicted RBP13.73□□□□□ -0.21
SNX1-211ENST00000560829 SCINQ9Y6U3 715 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 THSD7BQ9C0I4 1608 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 KAT6AQ92794 2004 aa13.73□□□□□ -0.21
SNX1-211ENST00000560829 PCNTO95613 3336 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 SMIM28A0A1B0GU29 152 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 CCDC66A2RUB6 948 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 XPOTO43592 962 aaKnown RBP13.72□□□□□ -0.21
SNX1-211ENST00000560829 RPS6KA5O75582 802 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 ZRANB2O95218 330 aaKnown RBP eCLIP13.72□□□□□ -0.21
SNX1-211ENST00000560829 CD4P01730 458 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 CHRNA1P02708 482 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 CALB1P05937 261 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 AKAP5P24588 427 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 CTNNA1P35221 906 aaKnown RBP13.72□□□□□ -0.21
SNX1-211ENST00000560829 PEX5P50542 639 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 VSNL1P62760 191 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 CC2D1AQ6P1N0 951 aaPredicted RBP13.72□□□□□ -0.21
SNX1-211ENST00000560829 MMS22LQ6ZRQ5 1243 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 WDTC1Q8N5D0 677 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 UBL4BQ8N7F7 174 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 RAET1EQ8TD07 263 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 ALG3Q92685 438 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 ELOVL4Q9GZR5 314 aa13.72□□□□□ -0.21
SNX1-211ENST00000560829 RNF39Q9H2S5 420 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms