RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	DHCR24	Q15392	516 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	ZNF260	Q3ZCT1	412 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	CEP78	Q5JTW2	689 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	CEP85	Q6P2H3	762 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	ZDHHC17	Q8IUH5	632 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	DCBLD1	Q8N8Z6	715 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	TGFBRAP1	Q8WUH2	860 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	RFK	Q969G6	155 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	TMEM79	Q9BSE2	394 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	ZSWIM4	Q9H7M6	989 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	GOLGA8A	A7E2F4	631 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	TISP43	B9A030	160 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	PRR23D1	E9PI22	279 aa	Predicted RBP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	ZEB2	O60315	1214 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	JTB	O76095	146 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	PRR23D2	P0DMB1	279 aa	Predicted RBP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	CYP2D6	P10635	497 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	SFPQ	P23246	707 aa	Known RBP eCLIP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	SLC5A3	P53794	718 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	DALRD3	Q5D0E6	543 aa	Known RBP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	PLAC9	Q5JTB6	97 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	TOR2A	Q5JU69	321 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	UTP14C	Q5TAP6	766 aa	Known RBP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	SLC2A7	Q6PXP3	512 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	OR2I1P	Q8NGU4	316 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	KLHL32	Q96NJ5	620 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	SH2D3A	Q9BRG2	576 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	PRSS22	Q9GZN4	317 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	SPRTN	Q9H040	489 aa	Predicted RBP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	VPS16	Q9H269	839 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	IFT22	Q9H7X7	185 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	FANCL	Q9NW38	375 aa		3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	TUBA8	Q9NY65	449 aa	Predicted RBP	3.92	□□□□□ -1.78
SPG11-222	ENST00000560435	MYO1F	O00160	1098 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	RHO	P08100	348 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	MTHFD1	P11586	935 aa	Known RBP	3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	PCSK6	P29122	969 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	CCKAR	P32238	428 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	ID4	P47928	161 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	NPTX2	P47972	431 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	PLCD1	P51178	756 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	POU6F2	P78424	691 aa	Predicted RBP	3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	SRSF2	Q01130	221 aa	Known RBP	3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	PIGF	Q07326	219 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	MIDN	Q504T8	468 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	CMIP	Q8IY22	773 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	CFAP52	Q8N1V2	620 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	REPS1	Q96D71	796 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	SERTAD4	Q9NUC0	356 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	EHD3	Q9NZN3	535 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	SH3BP4	Q9P0V3	963 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	APOBEC2	Q9Y235	224 aa	Known RBP	3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	NR2E3	Q9Y5X4	410 aa		3.91	□□□□□ -1.78
SPG11-222	ENST00000560435	GRM6	O15303	877 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	NHLRC4	P0CG21	123 aa	Predicted RBP	3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	ZFX	P17010	805 aa	Predicted RBP	3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	PABPC1L	Q4VXU2	614 aa	Known RBP	3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	PRAMEF17	Q5VTA0	474 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	ZNF551	Q7Z340	670 aa	Predicted RBP	3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	NSUN7	Q8NE18	718 aa	Known RBP	3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	ADAMTS15	Q8TE58	950 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	TBC1D5	Q92609	795 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	LRIG1	Q96JA1	1093 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	TTC1	Q99614	292 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	EBF3	Q9H4W6	596 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	WWOX	Q9NZC7	414 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	JKAMP	Q9P055	326 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	MAPRE3	Q9UPY8	281 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	PCDHGA2	Q9Y5H1	932 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435	SPATA31A3	Q5VYP0	1347 aa		3.9	□□□□□ -1.79
SPG11-222	ENST00000560435		A0A087X0B3	334 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	CCDC187	A0A096LP49	1063 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435		A0A0B4J269	797 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	PRRT4	C9JH25	899 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	PDE8A	O60658	829 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	TUBB3	Q13509	450 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	BMPR2	Q13873	1038 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	PXDC1	Q5TGL8	231 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	TAPT1	Q6NXT6	567 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	ZNF365	Q70YC5	407 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	FAM9A	Q8IZU1	332 aa	Predicted RBP	3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	FKBP10	Q96AY3	582 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	OSBPL9	Q96SU4	736 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	C7orf25	Q9BPX7	421 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	DNM3	Q9UQ16	869 aa		3.89	□□□□□ -1.79
SPG11-222	ENST00000560435	IGKV2D-30	A0A075B6S6	120 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	SMIM35	A0A1B0GVV1	85 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	MYMK	A6NI61	221 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	KCNU1	A8MYU2	1149 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	ZNF213	O14771	459 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	ADAMTS3	O15072	1205 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	SLC43A1	O75387	559 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	SBK3	P0C264	359 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	NDUFB7	P17568	137 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	ZNF134	P52741	427 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	SCAND1	P57086	179 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	RABEP1	Q15276	862 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	SLC29A4	Q7RTT9	530 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	GALNT16	Q8N428	558 aa		3.88	□□□□□ -1.79
SPG11-222	ENST00000560435	SMRP1	Q8NCR6	262 aa		3.88	□□□□□ -1.79

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