RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RINLQ6ZS11 566 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 ZC3H3Q8IXZ2 948 aaKnown RBP11.96□□□□□ -0.5
LDLR-208ENST00000558518 LMO3Q8TAP4 145 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 ASAP3Q8TDY4 903 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 ZNF668Q96K58 619 aaPredicted RBP11.96□□□□□ -0.5
LDLR-208ENST00000558518 TMEM120AQ9BXJ8 343 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 NOCTQ9UK39 431 aaKnown RBP11.96□□□□□ -0.5
LDLR-208ENST00000558518 NUMBLQ9Y6R0 609 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 FSCN2O14926 492 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 LPXNO60711 386 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 RPS6KA4O75676 772 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 CEP55Q53EZ4 464 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 WDR44Q5JSH3 913 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 MFSD7Q6UXD7 560 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 FBXL13Q8NEE6 735 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 FBXO41Q8TF61 875 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 TP73O15350 636 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 SERPINB2P05120 415 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 CCNB1P14635 433 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 GABPAQ06546 454 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 CYP4A22Q5TCH4 519 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 LIN9Q5TKA1 542 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 DAW1Q8N136 415 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 POU5F2Q8N7G0 328 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 PTPRN2Q92932 1015 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 NGLY1Q96IV0 654 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 POLR3CQ9BUI4 534 aaPredicted RBP11.95□□□□□ -0.5
LDLR-208ENST00000558518 MANSC1Q9H8J5 431 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 CCDC22O60826 627 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 RAD17O75943 681 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 ATP5HO75947 161 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 POTEJP0CG39 1038 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 ALAS1P13196 640 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 IVDP26440 423 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 RAB27AP51159 221 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 PTK6Q13882 451 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 BMT2Q1RMZ1 405 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 C4orf50Q6ZRC1 276 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 ZCCHC23Q6ZST2 131 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 CENPUQ71F23 418 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 SV2AQ7L0J3 742 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 TEX9Q8N6V9 391 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 AGR3Q8TD06 166 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 PSPC1Q8WXF1 523 aaKnown RBP11.95□□□□□ -0.5
LDLR-208ENST00000558518 RSAD2Q8WXG1 361 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 SYT11Q9BT88 431 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 TMEM109Q9BVC6 243 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 UVRAGQ9P2Y5 699 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 SLC4A7Q9Y6M7 1214 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 FRMPD4Q14CM0 1322 aa11.95□□□□□ -0.5
LDLR-208ENST00000558518 CIB2O75838 187 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 FAM155BO75949 473 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 GNAZP19086 355 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CRKP46108 304 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 STAT2P52630 851 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 INHBEP58166 350 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 TMPRSS15P98073 1019 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 HIF1AQ16665 826 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 BRDTQ58F21 947 aaPredicted RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 C6orf163Q5TEZ5 329 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 TXNRD3NBQ6F5E7 133 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 RGS9BPQ6ZS82 235 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 ARID3BQ8IVW6 561 aaPredicted RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 PPM1NQ8N819 430 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 RBM17Q96I25 401 aaKnown RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 MCEEQ96PE7 176 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CSRNP1Q96S65 589 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 STARD13Q9Y3M8 1113 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CTDP1Q9Y5B0 961 aaPredicted RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 ITGB4P16144 1822 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 F8VP50 259 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 SERPINB6P35237 376 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 ORC1Q13415 861 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 Q4G0T1 1027 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 BSPRYQ5W0U4 402 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 RHOT1Q8IXI2 618 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 FAM71AQ8IYT1 594 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 B4GALNT2Q8NHY0 566 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 FBXO27Q8NI29 283 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 C10orf82Q8WW14 230 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 NRG4Q8WWG1 115 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CD101Q93033 1021 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 NMD3Q96D46 503 aaKnown RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 PAFAH2Q99487 392 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 TCHPQ9BT92 498 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CALN1Q9BXU9 219 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 IVNS1ABPQ9Y6Y0 642 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 A6NHS1 94 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 CD19P15391 556 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 YARSP54577 528 aaKnown RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 JAG1P78504 1218 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 BTKQ06187 659 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 NFX1Q12986 1120 aaKnown RBP11.94□□□□□ -0.5
LDLR-208ENST00000558518 BMPR2Q13873 1038 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 FOXR2Q6PJQ5 311 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 MCOLN2Q8IZK6 566 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 NSL1Q96IY1 281 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 PPP1R36Q96LQ0 422 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 ACAP3Q96P50 834 aa11.94□□□□□ -0.5
LDLR-208ENST00000558518 SYNCQ9H7C4 482 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms