RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 C1orf228Q6PIY5 440 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 KBTBD6Q86V97 674 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 DIS3L2Q8IYB7 885 aaKnown RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 TTC9BQ8N6N2 239 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 C12orf50Q8NA57 414 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 BEST2Q8NFU1 509 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 GAB3Q8WWW8 586 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 DDX12PQ92771 950 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 TBC1D32Q96NH3 1257 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 ACO2Q99798 780 aaKnown RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 C8orf33Q9H7E9 229 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 BRMS1Q9HCU9 246 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 SLC38A7Q9NVC3 462 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 CNTN3Q9P232 1028 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 TUBGCP4Q9UGJ1 667 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 ACACAQ13085 2346 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 C1QTNF9BB2RNN3 333 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 RPP40O75818 363 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 KCNK5O95279 499 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 C1QTNF9P0C862 333 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 HARSP12081 509 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 PROZP22891 400 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 MCM7P33993 719 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 TNK2Q07912 1038 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 PLA2G2CQ5R387 149 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 TCEAL6Q6IPX3 200 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 GAREM2Q75VX8 874 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 APBB1IPQ7Z5R6 666 aaPredicted RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 RALGPS2Q86X27 583 aaPredicted RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 ARID3BQ8IVW6 561 aaPredicted RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 DAW1Q8N136 415 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 NECAB1Q8N987 351 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 WASF1Q92558 559 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 TCEAL3Q969E4 200 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 E2F7Q96AV8 911 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 IFT74Q96LB3 600 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 TARS2Q9BW92 718 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 GPR88Q9GZN0 384 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 BHMT2Q9H2M3 363 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 POLR3BQ9NW08 1133 aaPredicted RBP8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 ARHGAP28Q9P2N2 729 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 PCDHB8Q9UN66 801 aa8.93□□□□□ -0.98
CCDC88C-214ENST00000557507 DSPP15924 2871 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 ADAMTS20P59510 1910 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 K7ERI5 159 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 M0QZQ0 153 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 GIPC1O14908 333 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 EPB41L2O43491 1005 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 JAK2O60674 1132 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 SOAT2O75908 522 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 PROS1P07225 676 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 MCF2P10911 925 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 RPL9P32969 192 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 MPLP40238 635 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 NPTX2P47972 431 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 PEX3P56589 373 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 DUSP4Q13115 394 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 ARHGAP29Q52LW3 1261 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 SEZ6Q53EL9 994 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 PSAPL1Q6NUJ1 521 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 UNQ6494/PRO21346Q6UXR6 183 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 CACNA2D4Q7Z3S7 1137 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 NSUN7Q8NE18 718 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 APPL2Q8NEU8 664 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 FAM200AQ8TCP9 573 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 KIFAP3Q92845 792 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 CHFRQ96EP1 664 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 LOXL4Q96JB6 756 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 ZBTB45Q96K62 511 aaPredicted RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 ACAP3Q96P50 834 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 LSM14BQ9BX40 385 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 TMEM121BQ9BXQ6 578 aaPredicted RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 MRPL4Q9BYD3 311 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 SMG9Q9H0W8 520 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 MAFFQ9ULX9 164 aa8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 TIMM13Q9Y5L4 95 aaPredicted RBP8.92□□□□□ -0.98
CCDC88C-214ENST00000557507 MTMR11A4FU01 709 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 CCDC169A6NNP5 214 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 OAZ2O95190 189 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 OR52Z1P0C646 297 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 CCDC192P0DO97 292 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 CXCL8P10145 99 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 GABRR2P28476 465 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 AARSP49588 968 aaKnown RBP eCLIP8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 GUCY2FP51841 1108 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 CYP4F8P98187 520 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 YWHAHQ04917 246 aaPredicted RBP8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 SPAG1Q07617 926 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 MAPK7Q13164 816 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 PLD1Q13393 1074 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 SLC10A6Q3KNW5 377 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 GPR158Q5T848 1215 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 RNF43Q68DV7 783 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 FSTL4Q6MZW2 842 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 MPZL3Q6UWV2 235 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 SYNPOQ8N3V7 929 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 ATAD1Q8NBU5 361 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 ERMNQ8TAM6 284 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 BPIFB1Q8TDL5 484 aa8.91□□□□□ -0.98
CCDC88C-214ENST00000557507 GTF3C6Q969F1 213 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms