RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	GOLGA8A	A7E2F4	631 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	HMGB1P1	B2RPK0	211 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ANKRD65	E5RJM6	399 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956		M0R2C6	588 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	AGPS	O00116	658 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	SH2B2	O14492	632 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PPP1R12A	O14974	1030 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FOXN1	O15353	648 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CIAO1	O76071	339 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FBXO21	O94952	628 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	NDUFA10	O95299	355 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FGA	P02671	866 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GYPC	P04921	128 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	IGKV5-2	P06315	115 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	EZR	P15311	586 aa	Known RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GCFC2	P16383	781 aa	Known RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TCP1	P17987	556 aa	Known RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GPT	P24298	496 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GRK2	P25098	689 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TNFRSF8	P28908	595 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	SLC8A1	P32418	973 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ELF1	P32519	619 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KRT9	P35527	623 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GRK3	P35626	688 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	STAT5A	P42229	794 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	LIFR	P42702	1097 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FNTA	P49354	379 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FXR1	P51114	621 aa	Known RBP eCLIP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	VAV2	P52735	878 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	STX17	P56962	302 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	IRX1	P78414	480 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	UBXN1	Q04323	297 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ACTN3	Q08043	901 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KIF5A	Q12840	1032 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CUL4B	Q13620	913 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KRT31	Q15323	416 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	SPA17	Q15506	151 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	SNCB	Q16143	134 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PTPN21	Q16825	1174 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PROSER3	Q2NL68	480 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CR1L	Q2VPA4	569 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	HSP90AA4P	Q58FG1	418 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TCP11X2	Q5H9J9	407 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	EPHA10	Q5JZY3	1008 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CCDC122	Q5T0U0	273 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CFAP58	Q5T655	872 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	WLS	Q5T9L3	541 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	EMC10	Q5UCC4	262 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	RRAGB	Q5VZM2	374 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	VASN	Q6EMK4	673 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	NCAPH2	Q6IBW4	605 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PPP4R3A	Q6IN85	833 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KLHL10	Q6JEL2	608 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TEPP	Q6URK8	271 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GLB1L	Q6UWU2	654 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KDM7A	Q6ZMT4	941 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CCDC121	Q6ZUS5	278 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	COPS6	Q7L5N1	327 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	OTOP3	Q7RTS5	596 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	APTX	Q7Z2E3	356 aa	Known RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ZNF572	Q7Z3I7	529 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CD302	Q8IX05	232 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	IFT20	Q8IY31	132 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TMTC2	Q8N394	836 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FAM26E	Q8N5C1	309 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	MB21D1	Q8N884	522 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TXNDC5	Q8NBS9	432 aa	Known RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KCNH5	Q8NCM2	988 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ARRDC4	Q8NCT1	418 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KLHDC4	Q8TBB5	520 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	AEN	Q8WTP8	325 aa	Known RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	TBC1D22A	Q8WUA7	517 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	APPBP2	Q92624	585 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	P3H4	Q92791	437 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KAT2B	Q92831	832 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PTPRN2	Q92932	1015 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	OSBP2	Q969R2	916 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	FERMT2	Q96AC1	680 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	MIEF2	Q96C03	454 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PAGE5	Q96GU1	130 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CCDC114	Q96M63	670 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	C8orf37	Q96NL8	207 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	MMS19	Q96T76	1030 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	SLF1	Q9BQI6	1058 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	JPH2	Q9BR39	696 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	JAM3	Q9BX67	310 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	SLC26A6	Q9BXS9	759 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	PDGFD	Q9GZP0	370 aa	Predicted RBP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	THAP9	Q9H5L6	903 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	VCPKMT	Q9H867	229 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	BATF3	Q9NR55	127 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	KLC4	Q9NSK0	619 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	AATF	Q9NY61	560 aa	Known RBP eCLIP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	BCCIP	Q9P287	314 aa	Known RBP eCLIP	3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ASH2L	Q9UBL3	628 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	DSE	Q9UL01	958 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	ODF2L	Q9ULJ1	636 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	CAPN11	Q9UMQ6	739 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	GUCA1B	Q9UMX6	200 aa		3.16	□□□□□ -1.9
SLIRP-208	ENST00000556956	EID1	Q9Y6B2	187 aa		3.16	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms