RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FUKQ8N0W3 1084 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 NETO2Q8NC67 525 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 ZNF606Q8WXB4 792 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 TRIM6Q9C030 488 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 DCLK3Q9C098 648 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 GPR88Q9GZN0 384 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 PIH1D1Q9NWS0 290 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 GRHL1Q9NZI5 618 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC12A6Q9UHW9 1150 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 NUB1Q9Y5A7 615 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 RPTORQ8N122 1335 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 LRP5O75197 1615 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 CES2O00748 559 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 MCF2LO15068 1137 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 EXTL3O43909 919 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 CPA2P48052 419 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 CDH6P55285 790 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 NEDD9Q14511 834 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 SPARCL1Q14515 664 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 LY6KQ17RY6 165 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 TRMT10CQ7L0Y3 403 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 PDIK1LQ8N165 341 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 HELQQ8TDG4 1101 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 ASAP3Q8TDY4 903 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 CDHR1Q96JP9 859 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 FIZ1Q96SL8 496 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC38A10Q9HBR0 1119 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 A1CFQ9NQ94 594 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 ANKEF1Q9NU02 776 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 FAM49BQ9NUQ9 324 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 CLEC11AQ9Y240 323 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 PLCH1Q4KWH8 1693 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 MYH11P35749 1972 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 ADGRA3Q8IWK6 1321 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 P4HA2O15460 535 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 NEBLO76041 1014 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 MYBL1P10243 752 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 PECAM1P16284 738 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 FASTKD3Q14CZ7 662 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 C3orf62Q6ZUJ4 267 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 MAP4K3Q8IVH8 894 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 TMEM130Q8N3G9 435 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 PSPC1Q8WXF1 523 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 NOD2Q9HC29 1040 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 HAO1Q9UJM8 370 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 MRPL42Q9Y6G3 142 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 H0YCG3 227 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC26A4O43511 780 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 PROSCO94903 275 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 PDHA1P08559 390 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 TROVE2P10155 538 aaKnown RBP eCLIP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 DSG3P32926 999 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 FNTAP49354 379 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 IFRD2Q12894 506 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 PKN2Q16513 984 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 HIF1AQ16665 826 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 DUOXA2Q1HG44 320 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 SLFN12LQ6IEE8 588 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 BBOF1Q8ND07 529 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 CLEC4DQ8WXI8 215 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 FAF2Q96CS3 445 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 BORCS6Q96GS4 357 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 ATXN7L3BQ96GX2 97 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 LRRC37BQ96QE4 947 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 ADPGKQ9BRR6 497 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC24A3Q9HC58 644 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 UBN1Q9NPG3 1134 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 IP6K2Q9UHH9 426 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 POLIQ9UNA4 740 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 UBIAD1Q9Y5Z9 338 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 A0A1B0GUA9 196 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 CCDC78A2IDD5 438 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 H0YGN5 161 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 PRKCBP05771 671 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 KRT4P19013 534 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 GRM1Q13255 1194 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 DRP2Q13474 957 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 KCNV1Q6PIU1 500 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 CYP4X1Q8N118 509 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 HIPK4Q8NE63 616 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 NLRP7Q8WX94 980 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 STAMBPL1Q96FJ0 436 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 RBM41Q96IZ5 413 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 RPF1Q9H9Y2 349 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 METTL5Q9NRN9 209 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 NOCTQ9UK39 431 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 NFS1Q9Y697 457 aa12.82□□□□□ -0.36
CCDC88C-211ENST00000556726 A8MUI8 341 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 BAG2O95816 211 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 PHBP35232 272 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 TCF7P36402 384 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 GPC3P51654 580 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 BACE1P56817 501 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CNGA2Q16280 664 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 GJC2Q5T442 439 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 FAM160B1Q5W0V3 765 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 LVRNQ6Q4G3 990 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CCDC110Q8TBZ0 833 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 CNKSR2Q8WXI2 1034 aa12.81□□□□□ -0.36
CCDC88C-211ENST00000556726 P3H4Q92791 437 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms