RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MCPH1Q8NEM0 835 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 LNX1Q8TBB1 728 aaPredicted RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 TTPALQ9BTX7 342 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 FZD8Q9H461 694 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 TUFT1Q9NNX1 390 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 SH2B1Q9NRF2 756 aaPredicted RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 RXFP3Q9NSD7 469 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 FCF1Q9Y324 198 aaKnown RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 MRPS23Q9Y3D9 190 aaKnown RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 PDCD11Q14690 1871 aaKnown RBP11.03□□□□□ -0.64
SCFD1-220ENST00000556486 WDFY3Q8IZQ1 3526 aa11.03□□□□□ -0.64
SCFD1-220ENST00000556486 RNF223E7ERA6 249 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 WNT7AO00755 349 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 RETP07949 1114 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 HNRNPA1P09651 372 aaKnown RBP eCLIP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 ERCC5P28715 1186 aaPredicted RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 OR1D2P34982 312 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 AASDHQ4L235 1098 aaPredicted RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 RSPO2Q6UXX9 243 aaPredicted RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 TCEAL4Q96EI5 215 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 POLR3CQ9BUI4 534 aaPredicted RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 CHRDQ9H2X0 955 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 SMOC1Q9H4F8 434 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 BRD9Q9H8M2 597 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 LMAN1LQ9HAT1 526 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 RBM12Q9NTZ6 932 aaKnown RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 PRMT7Q9NVM4 692 aaPredicted RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 C2orf42Q9NWW7 574 aa11.02□□□□□ -0.65
SCFD1-220ENST00000556486 MRPS17Q9Y2R5 130 aaKnown RBP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 SF3B1O75533 1304 aaKnown RBP eCLIP11.02□□□□□ -0.65
SCFD1-220ENST00000556486 C1QTNF9BB2RNN3 333 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 I3L4J1 428 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 ERVH48-1M5A8F1 160 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 EIF5BO60841 1220 aaKnown RBP11.01□□□□□ -0.65
SCFD1-220ENST00000556486 ECI2O75521 394 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 LARGE1O95461 756 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 S1PR4O95977 384 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 RHOP08100 348 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 C1QTNF9P0C862 333 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 MUTP22033 750 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 PMLP29590 882 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 TXKP42681 527 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 GAS6Q14393 721 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 CSRP2Q16527 193 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 INTS6LQ5JSJ4 861 aaKnown RBP11.01□□□□□ -0.65
SCFD1-220ENST00000556486 IL31Q6EBC2 164 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 CATSPER3Q86XQ3 398 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 CELF5Q8N6W0 485 aaKnown RBP11.01□□□□□ -0.65
SCFD1-220ENST00000556486 NECAB1Q8N987 351 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 TTC8Q8TAM2 541 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 PIGOQ8TEQ8 1089 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 CCDC43Q96MW1 224 aaKnown RBP11.01□□□□□ -0.65
SCFD1-220ENST00000556486 NELL2Q99435 816 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 POLR3FQ9H1D9 316 aaPredicted RBP11.01□□□□□ -0.65
SCFD1-220ENST00000556486 TMEM60Q9H2L4 133 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 USP20Q9Y2K6 914 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 CDY1Q9Y6F8 540 aa11.01□□□□□ -0.65
SCFD1-220ENST00000556486 AKAP13Q12802 2813 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 NBEAQ8NFP9 2946 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 A0A087WWV3 80 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 PTGESO14684 152 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 SCAMP3O14828 347 aaKnown RBP11□□□□□ -0.65
SCFD1-220ENST00000556486 AXIN1O15169 862 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 DTNBO60941 627 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 POU2F2P09086 479 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 FCARP24071 287 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 CCNE1P24864 410 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 RPA1P27694 616 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 GDI1P31150 447 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 HOXA9P31269 272 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 SOX9P48436 509 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 NRLP54845 237 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 GDF10P55107 478 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 TUSC3Q13454 348 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 TRIM29Q14134 588 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 NAB2Q15742 525 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 FAM78AQ5JUQ0 283 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 Q6ZS52 159 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 PIK3R5Q8WYR1 880 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 FAM3CQ92520 227 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 BORCS6Q96GS4 357 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 ZSWIM3Q96MP5 696 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 NACC1Q96RE7 527 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 CORO1BQ9BR76 489 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 FAM126AQ9BYI3 521 aaPredicted RBP11□□□□□ -0.65
SCFD1-220ENST00000556486 IRX2Q9BZI1 471 aaPredicted RBP11□□□□□ -0.65
SCFD1-220ENST00000556486 CCDC113Q9H0I3 377 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 C2orf40Q9H1Z8 148 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 GPRC5CQ9NQ84 441 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11□□□□□ -0.653e-6■■■■■ 28.8
SCFD1-220ENST00000556486 PIAS3Q9Y6X2 628 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 CNOT1A5YKK6 2376 aaKnown RBP11□□□□□ -0.65
SCFD1-220ENST00000556486 FAM208BQ5VWN6 2430 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 NCANO14594 1321 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 ZFYVE26Q68DK2 2539 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 SDK1Q7Z5N4 2213 aa11□□□□□ -0.65
SCFD1-220ENST00000556486 GREB1Q4ZG55 1949 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 LRRIQ4A6NIV6 560 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 TMEM189-UBE2V1I3L0A0 370 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ACKR2O00590 384 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms