RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SLITRK1Q96PX8 696 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 KCNK9Q9NPC2 374 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 UBN1Q9NPG3 1134 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 HACL1Q9UJ83 578 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 TELO2Q9Y4R8 837 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 DNALI1O14645 258 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-222ENST00000555774 CFHP08603 1231 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 CD58P19256 250 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 RXRBP28702 533 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 MAGEA4P43358 317 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 C2CD6Q53TS8 623 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 NBPF12Q5TAG4 269 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-222ENST00000555774 ZKSCAN4Q969J2 545 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-222ENST00000555774 TARS2Q9BW92 718 aaKnown RBP14.29□□□□□ -0.12
SHMT2-222ENST00000555774 DDX56Q9NY93 547 aaKnown RBP14.29□□□□□ -0.12
SHMT2-222ENST00000555774 NAALADL1Q9UQQ1 740 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 USTQ9Y2C2 406 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 ARL2BPQ9Y2Y0 163 aa14.29□□□□□ -0.12
SHMT2-222ENST00000555774 LOC285556D6RIA3 1793 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 GJB6O95452 261 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 EGFRP00533 1210 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 SLC8A1P32418 973 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 STX2P32856 288 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 SSR1P43307 286 aaKnown RBP14.28□□□□□ -0.12
SHMT2-222ENST00000555774 VPS41P49754 854 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 SLC18A1P54219 525 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 TGFB2P61812 414 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 SURF1Q15526 300 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 SPATA21Q7Z572 469 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 RPAINQ86UA6 219 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 ALLCQ8N6M5 410 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 MGARPQ8TDB4 240 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 ZNF606Q8WXB4 792 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 ZBTB45Q96K62 511 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-222ENST00000555774 NRBP2Q9NSY0 501 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 PIM2Q9P1W9 311 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 ANKFY1Q9P2R3 1169 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 CTNNAL1Q9UBT7 734 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 FBXO40Q9UH90 709 aa14.28□□□□□ -0.12
SHMT2-222ENST00000555774 TCRBV5S1A1TA0A578 114 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 ADCY3O60266 1144 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 ASS1P00966 412 aaKnown RBP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 KRT1P04264 644 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 HMGCS2P54868 508 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 ELF3P78545 371 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 RIPK1Q13546 671 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 PIGHQ14442 188 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 LRRC14Q15048 493 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 P3H1Q32P28 736 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 GALNTL6Q49A17 601 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 DNAJC24Q6P3W2 148 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 ANKS1BQ7Z6G8 1248 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 NIPA2Q8N8Q9 360 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 ANKRD42Q8N9B4 389 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 TMEM35BQ8NCS4 154 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 CHST13Q8NET6 341 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 OR5B17Q8NGF7 314 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 RBM15Q96T37 977 aaKnown RBP eCLIP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 FGFR1OP2Q9NVK5 253 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 DNAJC17Q9NVM6 304 aaKnown RBP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 HOXC10Q9NYD6 342 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 TPX2Q9ULW0 747 aaKnown RBP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 SSC5DA1L4H1 1573 aa14.27□□□□□ -0.12
SHMT2-222ENST00000555774 COL11A1P12107 1806 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-222ENST00000555774 GSTTP1A0A1W2PQM5 241 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 CDH5P33151 784 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-222ENST00000555774 EFNA5P52803 228 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 SP2Q02086 613 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 MKRN4PQ13434 485 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-222ENST00000555774 MORF4L2Q15014 288 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 RASA2Q15283 850 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 TARBP2Q15633 366 aaKnown RBP14.27□□□□□ -0.13
SHMT2-222ENST00000555774 PREPLQ4J6C6 727 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-222ENST00000555774 WLSQ5T9L3 541 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 DAB2IPQ5VWQ8 1189 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 NUGGCQ68CJ6 796 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 CHADLQ6NUI6 762 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 WRNIP1Q96S55 665 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 FRMD8P1Q9BZ68 369 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-222ENST00000555774 PHACTR1Q9C0D0 580 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 SENP1Q9P0U3 644 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 PRKAG3Q9UGI9 489 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 KIAA1217Q5T5P2 1943 aa14.27□□□□□ -0.13
SHMT2-222ENST00000555774 CREB1P16220 341 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 GJC1P36383 396 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 EN1Q05925 392 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-222ENST00000555774 ACVR2BQ13705 512 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 CCDC142Q17RM4 750 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 ZBTB41Q5SVQ8 909 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 SPOCD1Q6ZMY3 1216 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 MICALL2Q8IY33 904 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 CYP4X1Q8N118 509 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 SLC16A10Q8TF71 515 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 MAML1Q92585 1016 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 NKD2Q969F2 451 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-222ENST00000555774 TGS1Q96RS0 853 aaKnown RBP14.26□□□□□ -0.13
SHMT2-222ENST00000555774 CD248Q9HCU0 757 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 ABCF3Q9NUQ8 709 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 PCDHGC3Q9UN70 934 aa14.26□□□□□ -0.13
SHMT2-222ENST00000555774 FAM47DPA6NHR8 397 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms