RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SRGNP10124 158 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 CDC42EP1Q00587 391 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 UAP1L1Q3KQV9 507 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 TMEM119Q4V9L6 283 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 EFCAB2Q5VUJ9 269 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 ZNF626Q68DY1 528 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 NLGN4YQ8NFZ3 816 aaPredicted RBP5.05□□□□□ -1.6
SCFD1-216ENST00000555550 TMEM125Q96AQ2 219 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 TEKT5Q96M29 485 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 MED15Q96RN5 788 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 VSX1Q9NZR4 365 aaPredicted RBP5.05□□□□□ -1.6
SCFD1-216ENST00000555550 COL4A3BPQ9Y5P4 624 aa5.05□□□□□ -1.6
SCFD1-216ENST00000555550 ZNF804BA4D1E1 1349 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 LINC00473A8K010 186 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 GABRDO14764 452 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PCDHGA12O60330 932 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 BMP15O95972 392 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 RPLP2P05387 115 aaKnown RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 IGKV2-30P06310 120 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 FCER1AP12319 257 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 HOXB6P17509 224 aaKnown RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 WASP42768 502 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 KRTAP10-6P60371 365 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 CTXN1P60606 82 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 SSBP2P81877 361 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 ATP8B2P98198 1209 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 FPGSQ05932 587 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 GRM1Q13255 1194 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 IL10RAQ13651 578 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 CD300EQ496F6 205 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PPP4R3AQ6IN85 833 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 ZNF782Q6ZMW2 699 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 GADL1Q6ZQY3 521 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 RASAL3Q86YV0 1011 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 ZCRB1Q8TBF4 217 aaKnown RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 HAPLN3Q96S86 360 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PCDHGA9Q9Y5G4 932 aaKnown RBP5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PCDHGA8Q9Y5G5 932 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PCDHGA7Q9Y5G6 932 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PCDHGA6Q9Y5G7 932 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 PCDHGA3Q9Y5H0 932 aa5.04□□□□□ -1.6
SCFD1-216ENST00000555550 CCDC154A6NI56 674 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 KCNAB3O43448 404 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 HTRA2O43464 458 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-216ENST00000555550 HAUS5O94927 633 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 MTHFD1P11586 935 aaKnown RBP5.03□□□□□ -1.6
SCFD1-216ENST00000555550 TFF2Q03403 129 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 TARDBPQ13148 414 aaKnown RBP eCLIP5.03□□□□□ -1.6
SCFD1-216ENST00000555550 KLF9Q13886 244 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-216ENST00000555550 ETFDHQ16134 617 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 CLPTM1LQ96KA5 538 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 FCRL4Q96PJ5 515 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 PCDH12Q9NPG4 1184 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 INTS13Q9NVM9 706 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 FLRT1Q9NZU1 646 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 LIMCH1Q9UPQ0 1083 aa5.03□□□□□ -1.6
SCFD1-216ENST00000555550 ZNF521Q96K83 1311 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 WASHC2CQ9Y4E1 1318 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 TRIM38O00635 465 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 GRM6O15303 877 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 PROM1O43490 865 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 KELP23276 732 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 SOX10P56693 466 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 LLGL1Q15334 1064 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 C3orf36Q3SXR2 165 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 PABPC1LQ4VXU2 614 aaKnown RBP5.02□□□□□ -1.61
SCFD1-216ENST00000555550 DACT2Q5SW24 774 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 MIER2Q8N344 545 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 DCBLD1Q8N8Z6 715 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 KAT5Q92993 513 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 COA7Q96BR5 231 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 ZNF48Q96MX3 618 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-216ENST00000555550 TLR10Q9BXR5 811 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 PACSIN1Q9BY11 444 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 IPPQ9Y573 584 aa5.02□□□□□ -1.61
SCFD1-216ENST00000555550 PRAMEF33A0A0G2JMD5 474 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 A0A1W2PS29 197 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 VWC2LB2RUY7 222 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 SGTAO43765 313 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 PRAMEF10O60809 474 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 CD1AP06126 327 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 IBSPP21815 317 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-216ENST00000555550 PTGER1P34995 402 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 HNRNPMP52272 730 aaKnown RBP eCLIP5.01□□□□□ -1.61
SCFD1-216ENST00000555550 ZNF280AP59817 542 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-216ENST00000555550 KRT85P78386 507 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 RAB39AQ14964 217 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 PTPRRQ15256 657 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 TXNRD1Q16881 649 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 NBPF8Q3BBV2 869 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 AOPEPQ8N6M6 819 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 SEMA6DQ8NFY4 1073 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 MYCBPAPQ8TBZ2 947 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 IFI44Q8TCB0 444 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 KRTAP2-2Q9BYT5 123 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 MAN1C1Q9NR34 630 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 HOMER2Q9NSB8 354 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-216ENST00000555550 CDYLQ9Y232 598 aa5.01□□□□□ -1.61
SCFD1-216ENST00000555550 TNKSO95271 1327 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms