RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 EFNA5P52803 228 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 NCKAP1LP55160 1127 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 PEX3P56589 373 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 GTF2BQ00403 316 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 PTPN11Q06124 597 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 BNIP3Q12983 259 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 STRN3Q13033 797 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 PPFIA1Q13136 1202 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 ADAM9Q13443 819 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 MYBPC2Q14324 1141 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 EMC2Q15006 297 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 PCBP1Q15365 356 aaKnown RBP eCLIP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 ENOX2Q16206 610 aaKnown RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 KIAA0753Q2KHM9 967 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 EDRF1Q3B7T1 1238 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 GJC2Q5T442 439 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 MAP3K21Q5TCX8 1036 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 PLA2G4FQ68DD2 849 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 ALG1LQ6GMV1 187 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 SLFN12LQ6IEE8 588 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 MTHFD1LQ6UB35 978 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 FAM43BQ6ZT52 329 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 C11orf57Q6ZUT1 292 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 HS2ST1Q7LGA3 356 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 APBB1IPQ7Z5R6 666 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 CTU1Q7Z7A3 348 aaKnown RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 FILIP1Q7Z7B0 1213 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 RSPH3Q86UC2 560 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 LUZP1Q86V48 1076 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 SFR1Q86XK3 245 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 ZBTB8OSQ8IWT0 167 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 SMYD4Q8IYR2 804 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 CSGALNACT2Q8N6G5 542 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 METTL13Q8N6R0 699 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 POU5F2Q8N7G0 328 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 DNAJC5GQ8N7S2 189 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 DEPTORQ8TB45 409 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 KCNN1Q92952 543 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 SRRTQ9BXP5 876 aaKnown RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 TRIM5Q9C035 493 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 GBP3Q9H0R5 595 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 POLR3FQ9H1D9 316 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 RNPEPQ9H4A4 650 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 THAP9Q9H5L6 903 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 METTL14Q9HCE5 456 aaKnown RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 TYW1Q9NV66 732 aaKnown RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 TBC1D7Q9P0N9 293 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 SUCLA2Q9P2R7 463 aaPredicted RBP5.48□□□□□ -1.53
VTI1B-202ENST00000553619 MAPK8IP1Q9UQF2 711 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 TRAF3IP3Q9Y228 551 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 GDAQ9Y2T3 454 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 NFE2L3Q9Y4A8 694 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 PCDHA2Q9Y5H9 948 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 THSD7BQ9C0I4 1608 aa5.48□□□□□ -1.53
VTI1B-202ENST00000553619 SMIM35A0A1B0GVV1 85 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 LRRIQ4A6NIV6 560 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 RSPH10B2B2RC85 870 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 KBTBD13C9JR72 458 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 M0QZ92 97 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 HAS3O00219 553 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 GIPC1O14908 333 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 PRPF6O94906 941 aaKnown RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 F2P00734 622 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 RSPH10BP0C881 870 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 NME2P22392 152 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 EEF1GP26641 437 aaKnown RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 CCND3P30281 292 aaPredicted RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 NMT1P30419 496 aaKnown RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 NPTX2P47972 431 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 STX17P56962 302 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 UBASH3AP57075 661 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 CHMP4BP1P59074 171 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 IGBP1P78318 339 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 PURAQ00577 322 aaKnown RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 BEX3Q00994 111 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 LRRC41Q15345 812 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 KCNA10Q16322 511 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 NFIL3Q16649 462 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 BMT2Q1RMZ1 405 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 SLC9C1Q4G0N8 1177 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 TMEM63BQ5T3F8 832 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 ANKRD40Q6AI12 368 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 TAF2Q6P1X5 1199 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 NFRKBQ6P4R8 1299 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 FBXO46Q6PJ61 603 aaPredicted RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 NXPE4Q6UWF7 544 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 EPM2AIP1Q7L775 607 aaPredicted RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 SRGAP1Q7Z6B7 1085 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 USP37Q86T82 979 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 ZNF410Q86VK4 478 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 RHPN2Q8IUC4 686 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 CREBRFQ8IUR6 639 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 DHX40Q8IX18 779 aaKnown RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 KIAA0895Q8NCT3 520 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 KLHDC9Q8NEP7 349 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 TRPV1Q8NER1 839 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 PRPF31Q8WWY3 499 aaKnown RBP5.47□□□□□ -1.53
VTI1B-202ENST00000553619 TMEM143Q96AN5 459 aa5.47□□□□□ -1.53
VTI1B-202ENST00000553619 GLT1D1Q96MS3 346 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms