RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 SF3A1Q15459 793 aaKnown RBP12.88□□□□□ -0.35
CKAP4-202ENST00000552828 TEAD2Q15562 447 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 KYAT1Q16773 422 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 ARL6IP4Q66PJ3 421 aaKnown RBP12.88□□□□□ -0.35
CKAP4-202ENST00000552828 C1orf228Q6PIY5 440 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 TMC8Q8IU68 726 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 CELF5Q8N6W0 485 aaKnown RBP12.88□□□□□ -0.35
CKAP4-202ENST00000552828 RSPRY1Q96DX4 576 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 MSANTD3Q96H12 275 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 DNAJC25Q9H1X3 360 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 UBQLN1Q9UMX0 589 aaKnown RBP12.88□□□□□ -0.35
CKAP4-202ENST00000552828 YIPF1Q9Y548 306 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 TRIP11Q15643 1979 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 COL4A2P08572 1712 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 CHADO15335 359 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 PAPSS2O95340 614 aaPredicted RBP12.87□□□□□ -0.35
CKAP4-202ENST00000552828 ZSCAN22P10073 491 aaPredicted RBP12.87□□□□□ -0.35
CKAP4-202ENST00000552828 TYMPP19971 482 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 PAX3P23760 479 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 NCKAP1LP55160 1127 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 RAD51AP2Q09MP3 1159 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 DUSP4Q13115 394 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 MYBPC2Q14324 1141 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 GAS6Q14393 721 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 ARSHQ5FYA8 562 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 CENPPQ6IPU0 288 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 FAM173BQ6P4H8 233 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 TMEM130Q8N3G9 435 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 SPEM1Q8N4L4 309 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 CRISPLD1Q9H336 500 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 C8orf33Q9H7E9 229 aaPredicted RBP12.87□□□□□ -0.35
CKAP4-202ENST00000552828 PARD6AQ9NPB6 346 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 LARSQ9P2J5 1176 aaKnown RBP12.87□□□□□ -0.35
CKAP4-202ENST00000552828 HSFX1Q9UBD0 423 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 ASB3Q9Y575 518 aa12.87□□□□□ -0.35
CKAP4-202ENST00000552828 TIMM13Q9Y5L4 95 aaPredicted RBP12.87□□□□□ -0.35
CKAP4-202ENST00000552828 ACACBO00763 2458 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 VWA3AA6NCI4 1184 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 LACTBL1A8MY62 500 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 SLC26A4O43511 780 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 LRP3O75074 770 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 PIGRP01833 764 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 PLA2G4BP0C869 781 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 CCNE1P24864 410 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 WEE1P30291 646 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 TNFSF9P41273 254 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 CXCL12P48061 93 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 EPHB3P54753 998 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 LILRA4P59901 499 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 PPP2R3AQ06190 1150 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 SPAG1Q07617 926 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 ENOX2Q16206 610 aaKnown RBP12.86□□□□□ -0.35
CKAP4-202ENST00000552828 TMEM119Q4V9L6 283 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 FOXD4L5Q5VV16 416 aaPredicted RBP12.86□□□□□ -0.35
CKAP4-202ENST00000552828 LAIR1Q6GTX8 287 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 HAUS6Q7Z4H7 955 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 USP37Q86T82 979 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 FOXD4L4Q8WXT5 416 aaPredicted RBP12.86□□□□□ -0.35
CKAP4-202ENST00000552828 KIF12Q96FN5 646 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 ZNF396Q96N95 335 aaPredicted RBP12.86□□□□□ -0.35
CKAP4-202ENST00000552828 MKNK1Q9BUB5 465 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 GMEB2Q9UKD1 530 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 ODF2LQ9ULJ1 636 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 CLIC4Q9Y696 253 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 KMT2BQ9UMN6 2715 aaPredicted RBP12.86□□□□□ -0.35
CKAP4-202ENST00000552828 SPTBN2O15020 2390 aa12.86□□□□□ -0.35
CKAP4-202ENST00000552828 TPRP12270 2363 aaKnown RBP12.85□□□□□ -0.35
CKAP4-202ENST00000552828 A0A0B4J269 797 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 NPHP3-ACAD11A0A0J9YXS1 232 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 A0A1W2PRU2 124 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 MYBPHLA2RUH7 354 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 XPOTO43592 962 aaKnown RBP12.85□□□□□ -0.35
CKAP4-202ENST00000552828 FGF19O95750 216 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 F13A1P00488 732 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 RETP07949 1114 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 OR4Q2P0C623 313 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 ALDH1A3P47895 512 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 ZNF131P52739 623 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 SATB1Q01826 763 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 CEBPZQ03701 1054 aaKnown RBP12.85□□□□□ -0.35
CKAP4-202ENST00000552828 LRRC32Q14392 662 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 ZRSR1Q15695 479 aaKnown RBP12.85□□□□□ -0.35
CKAP4-202ENST00000552828 WDR44Q5JSH3 913 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 SPATA1Q5VX52 437 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 OVOS1Q6IE37 1185 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 GAREM2Q75VX8 874 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 DNAJB7Q7Z6W7 309 aaPredicted RBP12.85□□□□□ -0.35
CKAP4-202ENST00000552828 ARID3BQ8IVW6 561 aaPredicted RBP12.85□□□□□ -0.35
CKAP4-202ENST00000552828 CD302Q8IX05 232 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 YAF2Q8IY57 180 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 ATAD1Q8NBU5 361 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 CSGALNACT1Q8TDX6 532 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 PSMG2Q969U7 264 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 AK8Q96MA6 479 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 LRRC3BQ96PB8 259 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 PGLYRP2Q96PD5 576 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 RTKNQ9BST9 563 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 SLITRK6Q9H5Y7 841 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 OBP2AQ9NY56 170 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 CDV3Q9UKY7 258 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms