RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZBED3Q96IU2 234 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 TARS2Q9BW92 718 aaKnown RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 SAYSD1Q9NPB0 183 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MYOZ2Q9NPC6 264 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 DOCK1Q14185 1865 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 LRRIQ4A6NIV6 560 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 F8VP50 259 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ZBED4O75132 1171 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 DGAT1O75907 488 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 SUN1O94901 812 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 MYBL1P10243 752 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 NQO1P15559 274 aaKnown RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TAC1P20366 129 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 CCND2P30279 289 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 EMC2Q15006 297 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PSMD6Q15008 389 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GALNTL6Q49A17 601 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 C4orf33Q8N1A6 199 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TMEM130Q8N3G9 435 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TAB3Q8N5C8 712 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TTLL6Q8N841 843 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ATP6V0A1Q93050 837 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 IFT74Q96LB3 600 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 CXorf56Q9H5V9 222 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ATP6V0A4Q9HBG4 840 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 JPH1Q9HDC5 661 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 SLCO1B3Q9NPD5 702 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 RBAKQ9NYW8 714 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 SAE1Q9UBE0 346 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PRKAG3Q9UGI9 489 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 FBXO40Q9UH90 709 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GRID1Q9ULK0 1009 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 STK38LQ9Y2H1 464 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ANK1P16157 1881 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GOLGA8SH3BPF8 625 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GOLGA8MH3BSY2 632 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PSTPIP1O43586 416 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 LIASO43766 372 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ZC3H11AO75152 810 aaKnown RBP eCLIP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 CDH16O75309 829 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ITGBL1O95965 494 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 CST3P01034 146 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PSAPP07602 524 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PECAM1P16284 738 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GLRA2P23416 452 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ATP5DP30049 168 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 MAN1A1P33908 653 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TNFSF9P41273 254 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 NOP14P78316 857 aaKnown RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 CLDN10P78369 228 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 BNIP1Q12981 228 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 NFX1Q12986 1120 aaKnown RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 DNAJC3Q13217 504 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PKN2Q16513 984 aaKnown RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 PLEKHA7Q6IQ23 1121 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 SYDE1Q6ZW31 735 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF677Q86XU0 584 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ECHDC2Q86YB7 292 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 KATNAL2Q8IYT4 538 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 CCDC89Q8N998 374 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 MCPH1Q8NEM0 835 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 AGAP11Q8TF27 550 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 MAIP1Q8WWC4 291 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF606Q8WXB4 792 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 MAML1Q92585 1016 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 FAM81BQ96LP2 452 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 GEMIN8Q9NWZ8 242 aaKnown RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 SLC9A2Q9UBY0 812 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 LGALS13Q9UHV8 139 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF148Q9UQR1 794 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 IVNS1ABPQ9Y6Y0 642 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 DNAH12Q6ZR08 3092 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 EVPLQ92817 2033 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TNS1Q9HBL0 1735 aaKnown RBP7.94□□□□□ -1.14
LIMA1-213ENST00000552720 TRIP11Q15643 1979 aa7.94□□□□□ -1.14
LIMA1-213ENST00000552720 EXOC1LA0A1B0GW35 172 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 TCEA3O75764 348 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 KRT1P04264 644 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 DPEP1P16444 411 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 KCNA3P22001 575 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ARSEP51690 589 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 POLGP54098 1239 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 COPS2P61201 443 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 CAV1Q03135 178 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 GPS1Q13098 491 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 NEDD9Q14511 834 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 NBPF12Q5TAG4 269 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 CYP4A22Q5TCH4 519 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 LIN9Q5TKA1 542 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 ABHD15Q6UXT9 468 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 MTMR14Q8NCE2 650 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 EXD1Q8NHP7 514 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 FEZF2Q8TBJ5 459 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 N4BP2L2Q92802 583 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-213ENST00000552720 KLHL29Q96CT2 875 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 GPRASP2Q96D09 838 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 TRIM11Q96F44 468 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 MAGEB18Q96M61 343 aa7.93□□□□□ -1.14
LIMA1-213ENST00000552720 MCEEQ96PE7 176 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms