RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PTP4A2Q12974 167 aa15.46■□□□□ 0.06
CLIP1-216ENST00000541410 TMEM132DQ14C87 1099 aa15.46■□□□□ 0.06
CLIP1-216ENST00000541410 ADPGKQ9BRR6 497 aa15.46■□□□□ 0.06
CLIP1-216ENST00000541410 NEUROG2Q9H2A3 272 aa15.46■□□□□ 0.06
CLIP1-216ENST00000541410 CCDC188H7C350 402 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 DAPK3O43293 454 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 GPR32O75388 356 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 GGCXP38435 758 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 SEL1L2Q5TEA6 688 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 WDTC1Q8N5D0 677 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 KIF12Q96FN5 646 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 KLHL11Q9NVR0 708 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 VPS18Q9P253 973 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 GJD2Q9UKL4 321 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 ABT1Q9ULW3 272 aaKnown RBP15.45■□□□□ 0.06
CLIP1-216ENST00000541410 PCDHA3Q9Y5H8 950 aa15.45■□□□□ 0.06
CLIP1-216ENST00000541410 MYCNP04198 464 aaPredicted RBP15.44■□□□□ 0.06
CLIP1-216ENST00000541410 DENND1BQ6P3S1 775 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 CXorf38Q8TB03 319 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 USP6NLQ92738 828 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 TTC7AQ9ULT0 858 aaPredicted RBP15.44■□□□□ 0.06
CLIP1-216ENST00000541410 FAN1Q9Y2M0 1017 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 ZNF236Q9UL36 1845 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 NRCAMQ92823 1304 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 PPEF2O14830 753 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 TLR3O15455 904 aaKnown RBP15.44■□□□□ 0.06
CLIP1-216ENST00000541410 TCF4P15884 667 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 AKAP5P24588 427 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 RGS2P41220 211 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 PSEN2P49810 448 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 LIN9Q5TKA1 542 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 HPDLQ96IR7 371 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 ZMAT2Q96NC0 199 aaKnown RBP15.44■□□□□ 0.06
CLIP1-216ENST00000541410 NXF3Q9H4D5 531 aaKnown RBP15.44■□□□□ 0.06
CLIP1-216ENST00000541410 AVENQ9NQS1 362 aaPredicted RBP15.44■□□□□ 0.06
CLIP1-216ENST00000541410 DPP3Q9NY33 737 aa15.44■□□□□ 0.06
CLIP1-216ENST00000541410 CCDC66A2RUB6 948 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 RRN3P2A6NIE6 340 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 AGPSO00116 658 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 SYF2O95926 243 aaKnown RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 SLC10A3P09131 477 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 C6orf222P0C671 652 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 FLT3P36888 993 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 KCNJ1P48048 391 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 RWDD2BP57060 319 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 TAS2R40P59535 323 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 PAK2Q13177 524 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 TRIM72Q6ZMU5 477 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 ZNF410Q86VK4 478 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 PHF13Q86YI8 300 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 MSL3Q8N5Y2 521 aaKnown RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 PRELID2Q8N945 189 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 HERPUD2Q9BSE4 406 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 GCOM2Q9BZD3 368 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 AP5M1Q9H0R1 490 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 ZFYVE28Q9HCC9 887 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 KLK14Q9P0G3 267 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 CYTH4Q9UIA0 394 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 PTPN22Q9Y2R2 807 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 FAM155AB1AL88 458 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 PIK3R2O00459 728 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 MYBL1P10243 752 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 MMP8P22894 467 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 ECHS1P30084 290 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 CDR1P51861 262 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 RAD23BP54727 409 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 POU5F1Q01860 360 aaKnown RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 GPS2Q13227 327 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 ATP13A4Q4VNC1 1196 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 TTC27Q6P3X3 843 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 TRPV1Q8NER1 839 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 WHAMMQ8TF30 809 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 MAGOHBQ96A72 148 aaKnown RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 C18orf25Q96B23 403 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-216ENST00000541410 MCEEQ96PE7 176 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 FAM118BQ9BPY3 351 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 ELOVL4Q9GZR5 314 aa15.43■□□□□ 0.06
CLIP1-216ENST00000541410 GOLGA6L10A0A0M3HER8 536 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 GOLGA8SH3BPF8 625 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 TNFRSF8P28908 595 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 DR1Q01658 176 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 SNX1Q13596 522 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 TERF2Q15554 542 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 HSP90B2PQ58FF3 399 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 EMBQ6PCB8 327 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 SLC13A5Q86YT5 568 aaPredicted RBP15.42■□□□□ 0.06
CLIP1-216ENST00000541410 CCDC26Q8TAB7 109 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 TRIM11Q96F44 468 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 APBA2Q99767 749 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 HEMGNQ9BXL5 484 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 BCO2Q9BYV7 579 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 ASB7Q9H672 318 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 TUBGCP4Q9UGJ1 667 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 GABRQQ9UN88 632 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 PIN4Q9Y237 131 aaKnown RBP15.42■□□□□ 0.06
CLIP1-216ENST00000541410 GOLGA6BA6NDN3 693 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 PGK1P00558 417 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 RARAP10276 462 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 CTNNA2P26232 953 aa15.42■□□□□ 0.06
CLIP1-216ENST00000541410 TRIM32Q13049 653 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms