RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ZNF197O14709 1029 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 ACTN4O43707 911 aaKnown RBP12.48□□□□□ -0.41
RTN3-209ENST00000538995 PFKFB1P16118 471 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 PTPN2P17706 415 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 HOXD13P35453 343 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 WNT7BP56706 349 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 TFAMQ00059 246 aaKnown RBP12.48□□□□□ -0.41
RTN3-209ENST00000538995 SMARCB1Q12824 385 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 IQCEQ6IPM2 695 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 RNF19BQ6ZMZ0 732 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 HS2ST1Q7LGA3 356 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 METTL23Q86XA0 190 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 NPAS3Q8IXF0 933 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 SLC44A3Q8N4M1 653 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 C1orf127Q8N9H9 656 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 ITFG1Q8TB96 612 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 HPS3Q969F9 1004 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 AGPAT3Q9NRZ7 376 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 HCFC1R1Q9NWW0 138 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 HSPBP1Q9NZL4 362 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 WNT16Q9UBV4 365 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 HPSEQ9Y251 543 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 MRPS23Q9Y3D9 190 aaKnown RBP12.48□□□□□ -0.41
RTN3-209ENST00000538995 YIPF1Q9Y548 306 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 NUMBLQ9Y6R0 609 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 DOCK8Q8NF50 2099 aa12.48□□□□□ -0.41
RTN3-209ENST00000538995 GOLGA8IPA6NC78 632 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 ZNF233A6NK53 670 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 GOLGA8JA6NMD2 632 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 KPNA7A9QM74 516 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 CYB561D2O14569 222 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 TMEM191BP0C7N4 346 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 AVPR2P30518 371 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 AFMP43652 599 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 EPHA5P54756 1037 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 TWF1Q12792 350 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 CUL4BQ13620 913 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 PRSS36Q5K4E3 855 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 PDZD4Q76G19 769 aaPredicted RBP12.47□□□□□ -0.41
RTN3-209ENST00000538995 C12orf56Q8IXR9 622 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 ZSWIM2Q8NEG5 633 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 GOLGA5Q8TBA6 731 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 SPATA18Q8TC71 538 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 SCFD1Q8WVM8 642 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 RSAD2Q8WXG1 361 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 BORCS6Q96GS4 357 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 BLZF1Q9H2G9 400 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 MFSD1Q9H3U5 465 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 PCIF1Q9H4Z3 704 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 PDE11AQ9HCR9 933 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 SLC2A4RGQ9NR83 387 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 SERTAD1Q9UHV2 236 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 FBXL21Q9UKT6 434 aa12.47□□□□□ -0.41
RTN3-209ENST00000538995 CACNA1HO95180 2353 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 A0A1W2PQ27 194 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 A0A1W2PQ64 194 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 A0A1W2PQD8 194 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 MTMR11A4FU01 709 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 TGFB1I1O43294 461 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 VNN2O95498 520 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 PDGFBP01127 241 aaPredicted RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 ITGB3P05106 788 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 OR4Q2P0C623 313 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 CASP1P29466 404 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 POLR2BP30876 1174 aaKnown RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 CLCN5P51795 746 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 VCPP55072 806 aaKnown RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 RBP5P82980 135 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 SNRNP35Q16560 246 aaKnown RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 KNOP1Q1ED39 458 aaKnown RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 SLC5A9Q2M3M2 681 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 CYP4A22Q5TCH4 519 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ASTLQ6HA08 431 aaPredicted RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 CENPPQ6IPU0 288 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 CBWD2Q8IUF1 395 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 WDR49Q8IV35 697 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 THEM5Q8N1Q8 247 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 TMEM86AQ8N2M4 240 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 OR10T2Q8NGX3 314 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 CXorf38Q8TB03 319 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 C2orf15Q8WU43 125 aaKnown RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 FGF14Q92915 247 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 PAGE5Q96GU1 130 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ANKRD36BP1Q96IX9 119 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ZNF512Q96ME7 567 aaPredicted RBP12.46□□□□□ -0.41
RTN3-209ENST00000538995 CORO1BQ9BR76 489 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 MTMR12Q9C0I1 747 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ZCWPW1Q9H0M4 648 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ASAH2Q9NR71 780 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 EXOC1Q9NV70 894 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 INTS13Q9NVM9 706 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 GDAP2Q9NXN4 497 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 CEP72Q9P209 647 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ASB3Q9Y575 518 aa12.46□□□□□ -0.41
RTN3-209ENST00000538995 ANK1P16157 1881 aa12.46□□□□□ -0.42
RTN3-209ENST00000538995 TSC2P49815 1807 aa12.46□□□□□ -0.42
RTN3-209ENST00000538995 MYO10Q9HD67 2058 aa12.46□□□□□ -0.42
RTN3-209ENST00000538995 A0A1B0GVL5 298 aa12.45□□□□□ -0.42
RTN3-209ENST00000538995 NARSO43776 548 aaKnown RBP12.45□□□□□ -0.42
RTN3-209ENST00000538995 KLRC4O43908 158 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms