RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 FBXO4Q9UKT5 387 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 NDRG2Q9UN36 371 aaKnown RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 MRPS17Q9Y2R5 130 aaKnown RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.18□□□□□ -0.94
USP28-203ENST00000537490 CLIC4Q9Y696 253 aa9.18□□□□□ -0.94
USP28-203ENST00000537490 GPR179Q6PRD1 2367 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 A0A1W2PRU2 124 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 ANO9A1A5B4 782 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 MTMR11A4FU01 709 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 HEPACAM2A8MVW5 462 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 MAN2B1O00754 1011 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 NCAM2O15394 837 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 KINO60870 393 aaKnown RBP9.17□□□□□ -0.94
USP28-203ENST00000537490 SOAT2O75908 522 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 CENPBP07199 599 aaPredicted RBP9.17□□□□□ -0.94
USP28-203ENST00000537490 SCP2P22307 547 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 MAGEA9P43362 315 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 RPS9P46781 194 aaKnown RBP9.17□□□□□ -0.94
USP28-203ENST00000537490 CDR1P51861 262 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 EPHB3P54753 998 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 MYBPC2Q14324 1141 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 PTPAQ15257 358 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 STXBP5Q5T5C0 1151 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 C9orf57Q5W0N0 161 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 DYMQ7RTS9 669 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 DNAJB7Q7Z6W7 309 aaPredicted RBP9.17□□□□□ -0.94
USP28-203ENST00000537490 MFSD6LQ8IWD5 586 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 TTC9BQ8N6N2 239 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 OR10T2Q8NGX3 314 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 FAM3CQ92520 227 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 LARP4BQ92615 738 aaKnown RBP9.17□□□□□ -0.94
USP28-203ENST00000537490 RUBCNQ92622 972 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 NELL1Q92832 810 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 IRF7Q92985 503 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 EPSTI1Q96J88 318 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 UPF2Q9HAU5 1272 aaKnown RBP9.17□□□□□ -0.94
USP28-203ENST00000537490 TRPV4Q9HBA0 871 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 TRPV5Q9NQA5 729 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 STYXL1Q9Y6J8 313 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 CITO14578 2027 aa9.17□□□□□ -0.94
USP28-203ENST00000537490 VPS37CA5D8V6 355 aaPredicted RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 ARNTLO00327 626 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ZNF263O14978 683 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 TBCAO75347 108 aaKnown RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 CYP11A1P05108 521 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ODC1P11926 461 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ADSSP30520 456 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ALDH1A3P47895 512 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 FOXK2Q01167 660 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 MTAPQ13126 283 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 PLD1Q13393 1074 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 CUL4AQ13619 759 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 TMEM132DQ14C87 1099 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ADALQ6DHV7 355 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ARMCX5Q6P1M9 558 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 FAM173BQ6P4H8 233 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 CRELD2Q6UXH1 353 aaPredicted RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 GAREM2Q75VX8 874 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ZNF720Q7Z2F6 126 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 SFR1Q86XK3 245 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ARID3BQ8IVW6 561 aaPredicted RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 KRI1Q8N9T8 703 aaKnown RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 ZBTB44Q8NCP5 570 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 DEPDC1BQ8WUY9 529 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ATRIPQ8WXE1 791 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 RMDN1Q96DB5 314 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 BORCS6Q96GS4 357 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 CLIC6Q96NY7 704 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 LRRC3BQ96PB8 259 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 HINFPQ9BQA5 517 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 MKNK1Q9BUB5 465 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 GPR88Q9GZN0 384 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ST6GALNAC4Q9H4F1 302 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 SLITRK6Q9H5Y7 841 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ASB7Q9H672 318 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 LMAN1LQ9HAT1 526 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 ZSCAN32Q9NX65 697 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 FBXO2Q9UK22 296 aaPredicted RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 AGO2Q9UKV8 859 aaKnown RBP9.16□□□□□ -0.94
USP28-203ENST00000537490 DERAQ9Y315 318 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 PIAS3Q9Y6X2 628 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 USP34Q70CQ2 3546 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 F5P12259 2224 aa9.16□□□□□ -0.94
USP28-203ENST00000537490 OTOGLQ3ZCN5 2332 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 SPTBN4Q9H254 2564 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 MYMKA6NI61 221 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 CYB561D2O14569 222 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 LILRB5O75023 590 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 PPP1R37O75864 691 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 CHRNB1P11230 501 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 PAX3P23760 479 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 CCNE1P24864 410 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 GABRR2P28476 465 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 WNT7BP56706 349 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 KCNA1Q09470 495 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 SLC39A12Q504Y0 691 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 GPR158Q5T848 1215 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 WSCD1Q658N2 575 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 SCARA3Q6AZY7 606 aa9.15□□□□□ -0.94
USP28-203ENST00000537490 SLFN12LQ6IEE8 588 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms