RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	ANLN	Q9NQW6	1124 aa		5.7	□□□□□ -1.5
ATM-223	ENST00000533979	MAP3K20	Q9NYL2	800 aa	Known RBP	5.7	□□□□□ -1.5
ATM-223	ENST00000533979	NOX1	Q9Y5S8	564 aa		5.7	□□□□□ -1.5
ATM-223	ENST00000533979	COL11A2	P13942	1736 aa	Predicted RBP	5.7	□□□□□ -1.5
ATM-223	ENST00000533979	MYADML2	A6NDP7	307 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHGA12	O60330	932 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	NDUFS2	O75306	463 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	CDKL5	O76039	1030 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PRSS23	O95084	383 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	SPDEF	O95238	335 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	LMNA	P02545	664 aa	Known RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	ALAS1	P13196	640 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCBP2	Q15366	365 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	MAPRE1	Q15691	268 aa	Known RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	ATP2B3	Q16720	1220 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	FOXR2	Q6PJQ5	311 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	KRBA2	Q6ZNG9	492 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	DNAJC10	Q8IXB1	793 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	RHOT1	Q8IXI2	618 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	CMTR2	Q8IYT2	770 aa	Known RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	ZGPAT	Q8N5A5	531 aa	Known RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	FITM2	Q8N6M3	262 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	NUP133	Q8WUM0	1156 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	TTC17	Q96AE7	1141 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	AIFM3	Q96NN9	605 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	DDX21	Q9NR30	783 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	FBXO34	Q9NWN3	711 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	LUZP4	Q9P127	313 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	DDX20	Q9UHI6	824 aa	Known RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	FAM50B	Q9Y247	325 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHGA9	Q9Y5G4	932 aa	Known RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHGA8	Q9Y5G5	932 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHGA7	Q9Y5G6	932 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHGA6	Q9Y5G7	932 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHGA3	Q9Y5H0	932 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	MRFAP1	Q9Y605	127 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	ARAP1	Q96P48	1450 aa		5.69	□□□□□ -1.5
ATM-223	ENST00000533979	FRMPD2	Q68DX3	1309 aa	Predicted RBP	5.69	□□□□□ -1.5
ATM-223	ENST00000533979	MYL3	P08590	195 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	BMP5	P22003	454 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	SLC16A1	P53985	500 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	CREM	Q03060	361 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	TP53BP2	Q13625	1128 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	ARHGAP29	Q52LW3	1261 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	OLFML1	Q6UWY5	402 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	ANKRD42	Q8N9B4	389 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	BEND2	Q8NDZ0	799 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	VPS37A	Q8NEZ2	397 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	CAVIN3	Q969G5	261 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	HDAC10	Q969S8	669 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	RUNDC1	Q96C34	613 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	NUP88	Q99567	741 aa	Predicted RBP	5.68	□□□□□ -1.5
ATM-223	ENST00000533979	ALOXE3	Q9BYJ1	711 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	GALNT9	Q9HCQ5	603 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	PLCB1	Q9NQ66	1216 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	MAN1C1	Q9NR34	630 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	PHTF1	Q9UMS5	762 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	SYNJ2	O15056	1496 aa		5.68	□□□□□ -1.5
ATM-223	ENST00000533979	POLR2A	P24928	1970 aa	Known RBP	5.67	□□□□□ -1.5
ATM-223	ENST00000533979	UNC119B	A6NIH7	251 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	PMM2	O15305	246 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	SGTA	O43765	313 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	PPFIA2	O75334	1257 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	ESRRB	O95718	433 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	GPANK1	O95872	356 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	SLC6A2	P23975	617 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	MAN1A1	P33908	653 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	MPL	P40238	635 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	SEC24C	P53992	1094 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	NANOS3	P60323	173 aa	Known RBP	5.67	□□□□□ -1.5
ATM-223	ENST00000533979	FOXI1	Q12951	378 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	KRT72	Q14CN4	511 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	EFCAB2	Q5VUJ9	269 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	UBE3B	Q7Z3V4	1068 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	ZNF575	Q86XF7	245 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	SMAP1	Q8IYB5	467 aa	Predicted RBP	5.67	□□□□□ -1.5
ATM-223	ENST00000533979	CPXCR1	Q8N123	301 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	IL17RD	Q8NFM7	739 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	SLC9A6	Q92581	669 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	MARS2	Q96GW9	593 aa	Known RBP	5.67	□□□□□ -1.5
ATM-223	ENST00000533979	MED15	Q96RN5	788 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	PNKP	Q96T60	521 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	HERPUD2	Q9BSE4	406 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	TMX4	Q9H1E5	349 aa	Predicted RBP	5.67	□□□□□ -1.5
ATM-223	ENST00000533979	ZNF69	Q9UC07	566 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	TUBD1	Q9UJT1	453 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	IPP	Q9Y573	584 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	PCDHA13	Q9Y5I0	950 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	SCIN	Q9Y6U3	715 aa		5.67	□□□□□ -1.5
ATM-223	ENST00000533979	TCRBV7S2A1N4T	A0A589	114 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	VCAM1	P19320	739 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	C5AR1	P21730	350 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	FGFR4	P22455	802 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	HAL	P42357	657 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	CXADR	P78310	365 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	CDC42EP1	Q00587	391 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	OCA2	Q04671	838 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	SCAP	Q12770	1279 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	ACAP2	Q15057	778 aa		5.66	□□□□□ -1.5
ATM-223	ENST00000533979	ALF	Q53S48	1182 aa		5.66	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms