RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DPP3Q9NY33 737 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 SNTG2Q9NY99 539 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 OGFRQ9NZT2 677 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 DERAQ9Y315 318 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 LSM8O95777 96 aaKnown RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 RAP1GAPP47736 663 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 CRYBB1P53674 252 aaPredicted RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 MRPS25P82663 173 aaKnown RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 C1QBPQ07021 282 aaKnown RBP22.06■■□□□ 1.12
VPS28-209ENST00000528142 C2CD6Q53TS8 623 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 CPNE8Q86YQ8 564 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 KIF12Q96FN5 646 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 SNX27Q96L92 541 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 C11orf70Q9BRQ4 267 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 ADAM22Q9P0K1 906 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 PCDHGC3Q9UN70 934 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 AGAP1Q9UPQ3 857 aa22.06■■□□□ 1.12
VPS28-209ENST00000528142 CDH8P55286 799 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 RBP5P82980 135 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 LLGL2Q6P1M3 1020 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 UBL4BQ8N7F7 174 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 WHAMMQ8TF30 809 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 HPDLQ96IR7 371 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 KRT12Q99456 494 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 SMYD3Q9H7B4 428 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 CYP3A43Q9HB55 503 aa22.05■■□□□ 1.12
VPS28-209ENST00000528142 SPDYE4A6NLX3 237 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 SEPT4O43236 478 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 PGK1P00558 417 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 MMP8P22894 467 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 CTNNA2P26232 953 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 CDH5P33151 784 aaPredicted RBP22.04■■□□□ 1.12
VPS28-209ENST00000528142 MARCKSL1P49006 195 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 RAD23BP54727 409 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 TNNC1P63316 161 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 SLC7A5Q01650 507 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 ZBTB6Q15916 424 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 LIN9Q5TKA1 542 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 PLEKHA7Q6IQ23 1121 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 ALKAL1Q6UXT8 129 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 MMS22LQ6ZRQ5 1243 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 RNPC3Q96LT9 517 aaKnown RBP22.04■■□□□ 1.12
VPS28-209ENST00000528142 ZMAT2Q96NC0 199 aaKnown RBP22.04■■□□□ 1.12
VPS28-209ENST00000528142 STIM2Q9P246 746 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 ANAPC7Q9UJX3 599 aa22.04■■□□□ 1.12
VPS28-209ENST00000528142 MAP2K7O14733 419 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 PAEPP09466 180 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 CTNNA1P35221 906 aaKnown RBP22.03■■□□□ 1.12
VPS28-209ENST00000528142 CACNB2Q08289 660 aaPredicted RBP22.03■■□□□ 1.12
VPS28-209ENST00000528142 TAF2Q6P1X5 1199 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 CXCL17Q6UXB2 119 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 PHLDB2Q86SQ0 1253 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 WDTC1Q8N5D0 677 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 AP1M1Q9BXS5 423 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 TRIM7Q9C029 511 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 ZNF518BQ9C0D4 1074 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 HES2Q9Y543 173 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 PCDHA3Q9Y5H8 950 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 CCDC188H7C350 402 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 CILPO75339 1184 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 FGGP02679 453 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 MYBL2P10244 700 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 ZNF211Q13398 564 aaPredicted RBP22.03■■□□□ 1.12
VPS28-209ENST00000528142 MAMLD1Q13495 774 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 UBXN11Q5T124 520 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 NXF3Q9H4D5 531 aaKnown RBP22.03■■□□□ 1.12
VPS28-209ENST00000528142 GTF2IRD1Q9UHL9 959 aa22.03■■□□□ 1.12
VPS28-209ENST00000528142 CCDC66A2RUB6 948 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 KRIT1O00522 736 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 SPOPO43791 374 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 ITGA4P13612 1032 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 P4HA1P13674 534 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 YARSP54577 528 aaKnown RBP22.02■■□□□ 1.12
VPS28-209ENST00000528142 NBPF20Q3BBV1 942 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 KLHL7Q8IXQ5 586 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 TMEM35BQ8NCS4 154 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 TWNKQ96RR1 684 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 HINFPQ9BQA5 517 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 CELF4Q9BZC1 486 aaKnown RBP22.02■■□□□ 1.12
VPS28-209ENST00000528142 CNTN3Q9P232 1028 aa22.02■■□□□ 1.12
VPS28-209ENST00000528142 PIN4Q9Y237 131 aaKnown RBP22.02■■□□□ 1.12
VPS28-209ENST00000528142 ADAMTS4O75173 837 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 GLI1P08151 1106 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 RARBP10826 455 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 TNFRSF8P28908 595 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 SLC4A11Q8NBS3 891 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 C1orf131Q8NDD1 294 aaKnown RBP22.01■■□□□ 1.11
VPS28-209ENST00000528142 ELOVL4Q9GZR5 314 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 SPC25Q9HBM1 224 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 MRPL47Q9HD33 250 aaKnown RBP22.01■■□□□ 1.11
VPS28-209ENST00000528142 CASP8AP2Q9UKL3 1982 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 TCRBV5S1A1TA0A578 114 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 RECQL4O94761 1208 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 ELNP15502 786 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 SLC1A1P43005 524 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 CLUL1Q15846 466 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 MAP9Q49MG5 647 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 HDXQ7Z353 690 aa22.01■■□□□ 1.11
VPS28-209ENST00000528142 TRIM6Q9C030 488 aaPredicted RBP22.01■■□□□ 1.11
VPS28-209ENST00000528142 LHX5Q9H2C1 402 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms