RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TAF4BQ92750 862 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 PGBD4Q96DM1 585 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 SEPT11Q9NVA2 429 aaKnown RBP20.19■□□□□ 0.82
VPS28-207ENST00000526977 NOCTQ9UK39 431 aaKnown RBP20.19■□□□□ 0.82
VPS28-207ENST00000526977 ITGA11Q9UKX5 1188 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 GIT1Q9Y2X7 761 aa20.19■□□□□ 0.82
VPS28-207ENST00000526977 NBNO60934 754 aa20.18■□□□□ 0.82
VPS28-207ENST00000526977 ZRANB2O95218 330 aaKnown RBP eCLIP20.18■□□□□ 0.822e-7■■□□□ 13.6
VPS28-207ENST00000526977 ASS1P00966 412 aaKnown RBP20.18■□□□□ 0.82
VPS28-207ENST00000526977 SLC47A2Q86VL8 602 aa20.18■□□□□ 0.82
VPS28-207ENST00000526977 EPS8L1Q8TE68 723 aa20.18■□□□□ 0.82
VPS28-207ENST00000526977 UBN1Q9NPG3 1134 aa20.18■□□□□ 0.82
VPS28-207ENST00000526977 ACP6Q9NPH0 428 aa20.18■□□□□ 0.82
VPS28-207ENST00000526977 DPP3Q9NY33 737 aa20.18■□□□□ 0.82
VPS28-207ENST00000526977 UBQLN1Q9UMX0 589 aaKnown RBP20.18■□□□□ 0.82
VPS28-207ENST00000526977 PACSIN2Q9UNF0 486 aaPredicted RBP20.18■□□□□ 0.82
VPS28-207ENST00000526977 SMIM28A0A1B0GU29 152 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 ATICP31939 592 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 BRD3Q15059 726 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 PLEKHG4Q58EX7 1191 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 CC2D1AQ6P1N0 951 aaPredicted RBP20.17■□□□□ 0.82
VPS28-207ENST00000526977 SLC24A5Q71RS6 500 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 SLFN11Q7Z7L1 901 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 BEST2Q8NFU1 509 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 APBB2Q92870 758 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 ZMAT2Q96NC0 199 aaKnown RBP20.17■□□□□ 0.82
VPS28-207ENST00000526977 PCDHB18PQ96TA0 734 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 ISCUQ9H1K1 167 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.17■□□□□ 0.82
VPS28-207ENST00000526977 CITO14578 2027 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 ANK1P16157 1881 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 ANKRD62A6NC57 917 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 SPDYE4A6NLX3 237 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 KRT19P08727 400 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 MYL6P60660 151 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 NOP14P78316 857 aaKnown RBP20.17■□□□□ 0.82
VPS28-207ENST00000526977 RBP5P82980 135 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 ITIH3Q06033 890 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 SLC35G2Q8TBE7 412 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 FAXDC2Q96IV6 333 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 GOLPH3Q9H4A6 298 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 TMEM39AQ9NV64 488 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 KLK14Q9P0G3 267 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 TBX21Q9UL17 535 aa20.17■□□□□ 0.82
VPS28-207ENST00000526977 KIAA0100Q14667 2235 aaKnown RBP20.16■□□□□ 0.82
VPS28-207ENST00000526977 CCDC151A5D8V7 595 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 SEC31AO94979 1220 aaKnown RBP20.16■□□□□ 0.82
VPS28-207ENST00000526977 FTLP02792 175 aaPredicted RBP20.16■□□□□ 0.82
VPS28-207ENST00000526977 ITGB3P05106 788 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 CLTBP09497 229 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 ABCB4P21439 1286 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 TBXAS1P24557 533 aaPredicted RBP20.16■□□□□ 0.82
VPS28-207ENST00000526977 GPNMBQ14956 572 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 SMYD5Q6GMV2 418 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 SPATA4Q8NEY3 305 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 CXorf38Q8TB03 319 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 CTNNBL1Q8WYA6 563 aaPredicted RBP20.16■□□□□ 0.82
VPS28-207ENST00000526977 SEPT8Q92599 483 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 MS4A14Q96JA4 679 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 THAP2Q9H0W7 228 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 SMARCAL1Q9NZC9 954 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 EHD2Q9NZN4 543 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 SIX4Q9UIU6 781 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 NCANO14594 1321 aa20.16■□□□□ 0.82
VPS28-207ENST00000526977 EOMESO95936 686 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 CYP11B1P15538 503 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 CYP3A5P20815 502 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 PAFAH1B1P43034 410 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 C2orf54Q08AI8 447 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 RPS6KA1Q15418 735 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 LRRC26Q2I0M4 334 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 TAF3Q5VWG9 929 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 RTN4RL1Q86UN2 441 aaPredicted RBP20.15■□□□□ 0.82
VPS28-207ENST00000526977 RFFLQ8WZ73 363 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 ARHGEF26Q96DR7 871 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 XYLT2Q9H1B5 865 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 CXCL16Q9H2A7 254 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 TSPYL2Q9H2G4 693 aaPredicted RBP20.15■□□□□ 0.82
VPS28-207ENST00000526977 OSGEPQ9NPF4 335 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 RNF14Q9UBS8 474 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 UMODL1Q5DID0 1318 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 FAM170AA1A519 330 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 FAM189BP81408 668 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 ZNF699Q32M78 642 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 CCDC181Q5TID7 509 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 AGMOQ6ZNB7 445 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 ECHDC2Q86YB7 292 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 MMGT1Q8N4V1 131 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 DBF4BQ8NFT6 615 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 VRTNQ9H8Y1 702 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 APOBEC3GQ9HC16 384 aaKnown RBP20.15■□□□□ 0.82
VPS28-207ENST00000526977 ARFGAP3Q9NP61 516 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 FAM53CQ9NYF3 392 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 OGFRQ9NZT2 677 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 STXBP5LQ9Y2K9 1186 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 NUB1Q9Y5A7 615 aa20.15■□□□□ 0.82
VPS28-207ENST00000526977 C9IYK1 514 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 RTN2O75298 545 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 CLSTN1O94985 981 aa20.14■□□□□ 0.81
VPS28-207ENST00000526977 KIF4AO95239 1232 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms