RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CEP57Q86XR8 500 aa22.3■■□□□ 1.16
CD44-222ENST00000526025 LNX1Q8TBB1 728 aaPredicted RBP22.3■■□□□ 1.16
CD44-222ENST00000526025 TAS1R2Q8TE23 839 aa22.3■■□□□ 1.16
CD44-222ENST00000526025 IMPG2Q9BZV3 1241 aa22.3■■□□□ 1.16
CD44-222ENST00000526025 SAMSN1Q9NSI8 373 aaKnown RBP22.3■■□□□ 1.16
CD44-222ENST00000526025 MTRRQ9UBK8 725 aa22.3■■□□□ 1.16
CD44-222ENST00000526025 HIDE1A8MVS5 230 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 KCNJ18B7U540 433 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 NCK2O43639 380 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 TBC1D4O60343 1298 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 HUS1O60921 280 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 AFPP02771 609 aaKnown RBP22.29■■□□□ 1.16
CD44-222ENST00000526025 YWHAHQ04917 246 aaPredicted RBP22.29■■□□□ 1.16
CD44-222ENST00000526025 CETN1Q12798 172 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 KCNH2Q12809 1159 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 KCNJ12Q14500 433 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 PSMD5Q16401 504 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 MAN2A1Q16706 1144 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 CBWD6Q4V339 395 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 TCP11X2Q5H9J9 407 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 CBWD3Q5JTY5 395 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 CBWD5Q5RIA9 395 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 B3GALT6Q96L58 329 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 STXBP5LQ9Y2K9 1186 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 SNX9Q9Y5X1 595 aa22.29■■□□□ 1.16
CD44-222ENST00000526025 P4HA1P13674 534 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 ZNF18P17022 549 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 MTIF2P46199 727 aaKnown RBP22.28■■□□□ 1.16
CD44-222ENST00000526025 NDUFV1P49821 464 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 MYL7Q01449 175 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 COL19A1Q14993 1142 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 DUSP6Q16828 381 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 ZNF667Q5HYK9 610 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 ZNF280DQ6N043 979 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 PPFIBP1Q86W92 1011 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 DHX40Q8IX18 779 aaKnown RBP22.28■■□□□ 1.16
CD44-222ENST00000526025 AOPEPQ8N6M6 819 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 CCDC150Q8NCX0 1101 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 AUTS2Q8WXX7 1259 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 KLHL5Q96PQ7 755 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 FAM124BQ9H5Z6 455 aaPredicted RBP22.28■■□□□ 1.16
CD44-222ENST00000526025 MMRN2Q9H8L6 949 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 FANCLQ9NW38 375 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 RAB20Q9NX57 234 aa22.28■■□□□ 1.16
CD44-222ENST00000526025 GTPBP10A4D1E9 387 aaKnown RBP22.27■■□□□ 1.16
CD44-222ENST00000526025 TACC1O75410 805 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 ADH1AP07327 375 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 CNPP09543 421 aaKnown RBP22.27■■□□□ 1.16
CD44-222ENST00000526025 PLXNA3P51805 1871 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 TNNC1P63316 161 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 IQCB1Q15051 598 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 WDR72Q3MJ13 1102 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 TCEAL5Q5H9L2 206 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 OVOS1Q6IE37 1185 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 SLC8B1Q6J4K2 584 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 LRSAM1Q6UWE0 723 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 METTL23Q86XA0 190 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 TLE6Q9H808 572 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 L1RE1Q9UN81 338 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 PCDHGC5Q9Y5F6 944 aa22.27■■□□□ 1.16
CD44-222ENST00000526025 BRWD1Q9NSI6 2320 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 OR6C75A6NL08 312 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 C2CD2LO14523 706 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 TEX28O15482 410 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 ZNF445P59923 1031 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 NOP14P78316 857 aaKnown RBP22.26■■□□□ 1.15
CD44-222ENST00000526025 SOWAHAQ2M3V2 549 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 PRSS55Q6UWB4 352 aaPredicted RBP22.26■■□□□ 1.15
CD44-222ENST00000526025 ADGRD2Q7Z7M1 963 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 PDCL2Q8N4E4 241 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 CLSTN3Q9BQT9 956 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 TUBGCP2Q9BSJ2 902 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 HSD3B7Q9H2F3 369 aa22.26■■□□□ 1.15
CD44-222ENST00000526025 GABRDO14764 452 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 CLASP2O75122 1294 aaKnown RBP22.25■■□□□ 1.15
CD44-222ENST00000526025 LHX1P48742 406 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 CTXN3Q4LDR2 81 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 WSCD1Q658N2 575 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 EFHBQ8N7U6 833 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 ANKRD20A12PQ8NF67 263 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 FAM200AQ8TCP9 573 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 SEMA4DQ92854 862 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 NIF3L1Q9GZT8 377 aa22.25■■□□□ 1.15
CD44-222ENST00000526025 LRRC10BA6NIK2 292 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 BECN2A8MW95 431 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 CSPG5O95196 566 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 WARSP23381 471 aaKnown RBP22.24■■□□□ 1.15
CD44-222ENST00000526025 CA8P35219 290 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 NRIP1P48552 1158 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 HYAL1Q12794 435 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 KCNC3Q14003 757 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 RAB33AQ14088 237 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 VWA3BQ502W6 1294 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 WDR44Q5JSH3 913 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 MIIPQ5JXC2 388 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 TMEM184AQ6ZMB5 413 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 CREBRFQ8IUR6 639 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 ADGRF2Q8IZF7 708 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 THEM5Q8N1Q8 247 aa22.24■■□□□ 1.15
CD44-222ENST00000526025 NDST4Q9H3R1 872 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms